Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq47 260 3e-67 seq427 131 4e-28 >seq47 Length=279382 Score = 260 bits (288), Expect = 3e-67 Identities = 259/334 (78%), Gaps = 16/334 (5%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 |||||||||| ||||||||| | || |||||||||| ||||| ||||||||||||||| Sbjct 78520 TTTACAATCCTAAGACCTTCAT-CATTCACGCGGCAT-GGCTGCGTCAGGCTTTCGCCCA 78463 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| ||| |||||||||||||||||||||||||||| ||| |||||||||||| ||| | Sbjct 78462 TTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAAT 78403 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| Sbjct 78402 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTACCTCAC 78343 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| ||| ||| || || ||| | || |||| Sbjct 78342 CAACTAGCTAATCAGACGCGGGCCGCTCCAATGGCGATA------AA--------TCTTT 78297 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | |||| ||| | || |||||||||| |||||| ||| | || || | || Sbjct 78296 CCCCCGAAGGGCACATCCGGTATTAGCTCAAGTTTCCCTGAGTTGTTCCGAACCAAAGGG 78237 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || |||| | | ||||||||||||||||| || Sbjct 78236 CACGTTCCCACGTGTTACTCACCCGTCCGCCACT 78203 >seq427 Length=39484 Score = 131 bits (144), Expect = 4e-28 Identities = 149/195 (76%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| ||| ||| |||| |||||||| |||||||| |||||||||| |||||| Sbjct 9943 CCTTCTT-CACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCC 10000 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 ||||||||||| | ||||||| |||| ||||||| ||| |||| |||||||| || Sbjct 10001 CACTGCTGCCT-TTAAAAAAGTCTGGGCCGTATCTCAGTCCCAATGTGGCTGATCATTCT 10059 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC-TAATCC 195 ||| | ||| || ||| ||| |||||| | |||| |||||||| | ||||| Sbjct 10060 TTCAAATCAGCTAAAGATAATCGGCTTGGTAGTCTATTAAACTACCAACTACCATAATCT 10119 Query 196 GACCTAGGCTCATCT 210 | || ||||||| Sbjct 10120 TGCGTAAACTCATCT 10134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071979814240