Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq47 336 8e-90 seq1663 127 7e-27 >seq47 Length=279382 Score = 336 bits (372), Expect = 8e-90 Identities = 413/553 (75%), Gaps = 22/553 (4%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTT-GATTTCGGTA-AGCTTGTGGGCCCCCTAGACCATCCAGTGC 110 || |||||||||||| || || || |||| |||| | | ||| | |||| |||||| Sbjct 81194 GGTATTCGGAGTTTGATTAGAATT-GGTACAGCTCGCGCCGCCCGCAT-CCATTCAGTGC 81137 Query 111 TCTACCTCCGGGAAGAAACACGC-GACGCTGCACCTAAATGCATTTCGGGGAGAACCAGC 169 |||||| || | | || | | || || |||||||| ||||| ||||||||||| Sbjct 81136 TCTACCCCCCG-AGGAGTCCGTCTGAGGCACTACCTAAATAGTTTTCGCGGAGAACCAGC 81078 Query 170 TATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAAC 229 ||| | | ||||||||||||||||||||||||||||| ||||||| | |||||||| Sbjct 81077 TATGTCCAGGTTTGATTGGCCTTTCACCCCTATCCACAAGTCATCCGAGAATTTTTCAAC 81018 Query 230 CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGAT 289 | |||||||||||||| ||| |||||| ||||||||||| ||||||||||| Sbjct 81017 ATTCACCGGTTCGGTCCTCCAGTTGGTGTTACCCAACCTTCAACCTGCTCATGGATAGAT 80958 Query 290 CACTTCGCTTCGGGTCTTGAT-CGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348 ||| | | |||||||| | || || ||| || |||||||||| |||||||||||||| Sbjct 80957 CACCTGGTTTCGGGTCGTCATGCGACGTACTTATTCGCCCTATTCAGACTCGCTTTCGCT 80898 Query 349 ACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408 || |||| || |||| |||| || || || || || |||| | | |||| | || Sbjct 80897 GCGCCTACACCTAACGGCTTAAGCTTGC-ACGGCACATGAAGTCGCTGACCCATTATACA 80839 Query 409 AAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACA 468 ||||| ||||||||||| | || | |||||||| | |||||||| Sbjct 80838 AAAGGTACGCCGTCACC-----------ACGCGCGGTGGCTCCGACTGCTTGTAGGCTTC 80790 Query 469 TGGTTTCAGGTACTATTTCACTCCCC--GCCAGGGGTACTTTTCACCTTTCCCTCACGGT 526 | ||||||| || ||||||||||| | | ||||| |||||||||||||||||||||| Sbjct 80789 CGATTTCAGGATCTGTTTCACTCCCCTTGTC-GGGGTGCTTTTCACCTTTCCCTCACGGT 80731 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTC 586 |||||| |||||||||||| ||||||| |||||||| |||||||||| ||| ||| Sbjct 80730 ACTTGTTCGCTATCGGTCATTGAGGAGTACTTAGGCTTGGAGGGTGGTCCCCCCATGTTC 80671 Query 587 ACACGAAATTTCA 599 | || |||||| Sbjct 80670 AGACAGGATTTCA 80658 >seq1663 Length=1314 Score = 127 bits (140), Expect = 7e-27 Identities = 180/252 (71%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || || ||||| || | |||| ||| || | |||||||||| Sbjct 664 ATTCGGAGTTTCCAAGAATTTAGTAAGTTTTTACACCCCTTAGCTCAACGAGTGCTCTAC 723 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | || || | | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 724 C-CCAAAAAAAGATTTTAAATGCTCTACTTCAATAGATTTCGTGGAAAACCAGCTATCTC 782 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||||||| ||||||||| |||| ||||| ||||| || | ||| | || || || Sbjct 783 TGAGTTTGATTAGCCTTTCACTCCTAACCACAAATCATCTCCATATTTTGCCACATATGT 842 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 | ||||| ||||||| | || ||||| ||||| ||| ||||| ||||||||| Sbjct 843 GAGTTCGATCCTCCAAACAGTTTTACCTATTTTTCAATCTGTTCATGGTTAGATCACTCA 902 Query 296 GCTTCGGGTCTT 307 | |||||||||| Sbjct 903 GTTTCGGGTCTT 914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817565774592