Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq47 342 1e-91 >seq47 Length=279382 Score = 342 bits (378), Expect = 1e-91 Identities = 337/420 (80%), Gaps = 13/420 (3%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||| ||||| ||| || ||||||||| | |||||||||||||||||| | Sbjct 81049 CCTATCCACAAGTCAT-CCGAGAA-TTTTTCAACATTCACCGGTTCGGTCCTCCAGTTGG 80992 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||||||||||| |||||||| ||| ||||||||| || ||||| |||||| | Sbjct 80991 T-GTTACCCAACCTT-CAACCTGCTCAT-GGATAGATCACCTGGTTT-CGGGTCGTCATG 80936 Query 124 CCAGCGACT-AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTA 181 | | ||| | ||||||| | ||||||||||| |||| ||||| | |||| | ||| Sbjct 80935 CGACGTACTTATTCGCCCTATTCAGACTCGCTTT-CGCTGCGCCTACACCTAACGGCTTA 80877 Query 182 AGCTTTGCCACTGAAAAT-AAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAA 240 ||||| ||| | | || ||||||||||||||||||||||||||||||| |||||| Sbjct 80876 AGCTTG--CACGGCACATGAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACCACG 80819 Query 241 CAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 | |||| |||| |||||||||| || | || ||||||||||| |||||||||||| Sbjct 80818 CGCGGTGG-CTCCGACTGCTTGTAGGCTTCCGATTTCAGGATCTGTTTCACTCCCCTTGT 80760 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 |||||| |||||| |||||||||||||||||| |||| |||||||||| | || |||| | Sbjct 80759 CGGGGTGCTTTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGGTCATTGAGGAGTACT 80700 Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| |||||||| |||||||||||| |||||||| |||| |||| ||| |||||||| Sbjct 80699 TAGGCTTGGAGGGTGGTCCCCCCATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTCG 80640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241576620672