Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq559 82.4 5e-14 seq51 82.4 5e-14 >seq559 Length=16282 Score = 82.4 bits (90), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 || || |||| || |||| || ||||||| ||||||||||| ||||||||||||||| Sbjct 9617 AATTTTTCACCGAGTCATT-CAATCGGTAGGT-GCGACGGGCGGTGTGTACAAAGGGCAG 9560 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||||| ||||||||||| Sbjct 9559 GGACGTAAT-CAACGCAAGCT 9540 >seq51 Length=275480 Score = 82.4 bits (90), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 3/81 (4%) Strand=Plus/Plus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 || || |||| || |||| || ||||||| ||||||||||| ||||||||||||||| Sbjct 24828 AATTTTTCACCGAGTCATT-CAATCGGTAGGT-GCGACGGGCGGTGTGTACAAAGGGCAG 24885 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||||| ||||||||||| Sbjct 24886 GGACGTAAT-CAACGCAAGCT 24905 Score = 82.4 bits (90), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 3/81 (4%) Strand=Plus/Plus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 || || |||| || |||| || ||||||| ||||||||||| ||||||||||||||| Sbjct 38217 AATTTTTCACCGAGTCATT-CAATCGGTAGGT-GCGACGGGCGGTGTGTACAAAGGGCAG 38274 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||||| ||||||||||| Sbjct 38275 GGACGTAAT-CAACGCAAGCT 38294 Score = 82.4 bits (90), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 3/81 (4%) Strand=Plus/Plus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 || || |||| || |||| || ||||||| ||||||||||| ||||||||||||||| Sbjct 57123 AATTTTTCACCGAGTCATT-CAATCGGTAGGT-GCGACGGGCGGTGTGTACAAAGGGCAG 57180 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||||| ||||||||||| Sbjct 57181 GGACGTAAT-CAACGCAAGCT 57200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300794689940