Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq47 224 2e-56 seq427 113 9e-23 >seq47 Length=279382 Score = 224 bits (248), Expect = 2e-56 Identities = 235/306 (77%), Gaps = 17/306 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||||| ||||| |||| ||||||| |||| || ||||||||||||||||||||| Sbjct 78489 GGCATGGCTGCGTCAGGCTTTCGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAG 78430 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| ||||||||||||||||||||||||||| | ||| |||||||| || ||||| ||| Sbjct 78429 GAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 78370 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| || ||| ||||||||||| |||||| | |||| ||| || Sbjct 78369 CGTCGCCTTGGTGAGCCTTTACCTCACCAACTAGCTAATCAGACGCGGGCCGCTCCAATG 78310 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 ||||||||||||| | ||| | || || || |||||||||| Sbjct 78309 GCGATAAATCTTT--CCCCCGAAGG--GC---------AC---ATCCGGTATTAGCTCAA 78266 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| ||| |||| | || |||| ||| | |||||||||||||||||||||| Sbjct 78265 GTTTCCCTGAGTTGTTCCGAACCAAAGGGCACGTT-CCCACGTGTTACTCACCCGTCCGC 78207 Query 301 CACTAA 306 |||||| Sbjct 78206 CACTAA 78201 >seq427 Length=39484 Score = 113 bits (124), Expect = 9e-23 Identities = 141/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||| | |||| | |||||| ||| || |||||||||||||| | ||||| Sbjct 9965 GCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCTGCCTTTAAAAA-AGTCT 10023 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||| |||||||||||||||||| | ||| || ||| | |||| ||| |||| Sbjct 10024 GGGCCGTATCTCAGTCCCAATGTGGCTGATCATTCTTTCAAATCAGCTAAAGATAATCGG 10083 Query 127 CTTGGTGGGCTATTATCTCACCAACTACC-TAATCGGCCGCGAGCCCATCTTTCAGCG-- 183 |||||| | |||||| |||||||||| ||||| || | | ||||||| | || Sbjct 10084 CTTGGTAGTCTATTAAACTACCAACTACCATAATCTTGCGTAAACTCATCTTTTAACGTT 10143 Query 184 ATAAATCTTT 193 |||| |||| Sbjct 10144 TTAAAACTTT 10153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998381200128