Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq47 244 2e-62 seq1663 114 3e-23 >seq47 Length=279382 Score = 244 bits (270), Expect = 2e-62 Identities = 299/402 (74%), Gaps = 7/402 (2%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||| || |||| | ||||| | ||| || Sbjct 81646 CGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTAACCCTGCGCAGATTAGCTTTACG 81587 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||||| |||||| ||| || ||||| | ||||||||||| | Sbjct 81586 CAGGAACCCTTGGGCTTTCGGCGAGAGGGTCTCTCACCCTCTTTATCGCTACTCATGTCA 81527 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACG 178 ||||||||||| | | ||||| || | |||| | || |||||| || || Sbjct 81526 GCATTCTCACTTCCGATACCTCCAACA-AGGCTCACGCCTCATCTTCACAGGCTTACGGA 81468 Query 179 ACGCTCCCCTACC-CAACCACACAGGTTG---CCACAGCTTCGGCGGATAACTTAAGCCC 234 ||||||| ||||| | | || || ||| | |||||||| | ||| ||||| Sbjct 81467 ACGCTCCGCTACCGCTTGCTCAAAGAGCAAACCCATACCTTCGGCGACTGGCTTTAGCCC 81408 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || |||||| || |||| | || ||||||||||||||| |||||| ||||| || ||| Sbjct 81407 CGTTACATTTTCCGCGCAGGTTCGCTTGACCAGTGAGCTGTTACGCTTTCTTTAAATGAT 81348 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 ||||||||| |||||||| ||||||||||| | |||| ||||||| ||||||||| || Sbjct 81347 GGCTGCTTCTAAGCCAACATCCTGGTTGTCAAAGCAAACCCACATCGTTTCCCACTTAGC 81288 Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 || |||| |||||||||| ||||| | ||| ||||||||| Sbjct 81287 CAGTACTTGGGGGCCTTAGATGATGGTTAGGGTTGTTTCCCT 81246 >seq1663 Length=1314 Score = 114 bits (126), Expect = 3e-23 Identities = 141/189 (75%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| || |||||| | || |||||| | ||||| || ||| ||||| |||| Sbjct 423 GCTTCGGTAAATTTCTTAAGTCTCGATACATTTTAGGCGCAAAAAAACTAGACCAATGAG 482 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||| ||||| |||| |||||||||||||||| |||| |||||||| Sbjct 483 CTATTACGCTTTCTTTAAAGGGTGGCTGCTTCCAAGCCTACCTGTTGGTTGTCATGATTT 542 Query 332 CTCCACATCCTTTCCCACTGAG-TCACCACTTAGGGGCCTTAGCTGAT-GATCTGGGCTG 389 | || |||||| |||| || | | |||| | ||||||| ||| |||||||||| Sbjct 543 TTTTACTTCCTTTTTCACTTAGAATATTATTTAGAGACCTTAGC-GATCAATCTGGGCTG 601 Query 390 TTTCCCTCT 398 ||||||||| Sbjct 602 TTTCCCTCT 610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177577825792