Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq47 150 1e-34 seq427 98.7 8e-19 seq117 73.4 3e-11 >seq47 Length=279382 Score = 150 bits (166), Expect = 1e-34 Identities = 129/157 (82%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATAC-ACTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| |||||||| ||| || || ||||| |||||| |||||||||||| Sbjct 79384 TCGAGTTGCAGAGAACAATCCGAACT--GAGACGACTTTTAGGGATTGGCTCCCCCTCGC 79327 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 ||| | || ||||||||| |||||||| ||||||| ||||| | |||||||| Sbjct 79326 GGGATTGCAACCCTCTGTAGTCGCCATTGTAGCACGTGTGTAGCCCACCTTGTAAGGGCC 79267 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 |||||||||||||||||||||| ||||||||||| || Sbjct 79266 ATGAGGACTTGACGTCATCCCCGCCTTCCTCCGGATT 79230 >seq427 Length=39484 Score = 98.7 bits (108), Expect = 8e-19 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGT 134 |||| |||||||||| ||||||| ||||| || |||||||||||||| |||||||||| Sbjct 9150 TGTAATTACCATTGTAGCACGTGTGTAGCCCAACTCATAAGGGCCATGAAGACTTGACGT 9209 Query 135 CATCCCCACCTTCC 148 |||||||||||||| Sbjct 9210 CATCCCCACCTTCC 9223 >seq117 Length=192600 Score = 73.4 bits (80), Expect = 3e-11 Identities = 62/75 (83%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCC-ATAAGGGCCATGAGGACTTGACG 133 |||| |||||||||| | ||||| ||| | | | | ||||||||||| ||||||||| Sbjct 34924 TGTAGTTACCATTGTAGCATGTGTGTAGCGCGAACTTACAAGGGCCATGAAGACTTGACG 34865 Query 134 TCATCCCCACCTTCC 148 ||||||||||||||| Sbjct 34864 TCATCCCCACCTTCC 34850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415992411510