Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq47 289 4e-76 seq427 167 4e-39 >seq47 Length=279382 Score = 289 bits (320), Expect = 4e-76 Identities = 220/260 (85%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| ||||| |||||||| ||| ||| || |||| Sbjct 82899 GCTTAGATGCTTTCAGCGGTTATCTATTCCACACTTAGCTACCCTGCTGCACAGCTGGCG 82840 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | || ||| |||||||||| ||||||||||||||||||||||||| |||||| |||| Sbjct 82839 CCATGACAGGTCCACCAGAGGTGTGTCCATCCCGGTCCTCTCGTACTAGGGACAGATCCT 82780 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| | || ||| |||||| | |||||||||| ||||||||| ||||||||||||||| Sbjct 82779 CTCAAGTCTCGTACACCCACGGCAGATAGGGACCAAACTGTCTCACGACGTTCTGAACCC 82720 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| || ||||||| ||||||||||| |||||||||||||| || ||||||||| Sbjct 82719 AGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACCTGCTCCAGCCCCAG 82660 Query 256 GATGAGACGAGCCGACATCG 275 |||| || |||||||||||| Sbjct 82659 GATGTGATGAGCCGACATCG 82640 >seq427 Length=39484 Score = 167 bits (184), Expect = 4e-39 Identities = 194/260 (75%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||||||||| |||||| ||| |||||| | | || |||| ||| | Sbjct 6580 CTTAGATGCCTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGCTTTTGAAA- 6522 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 |||| | | |||||||| ||| || || || ||||||||||||| | || | || Sbjct 6521 --CAACCGATACACCAGAGATTTACCCTTCTCGATCCTCTCGTACTAGAGTTAGATTCTT 6464 Query 137 TCAAATTTCCTACGCCCACGACG-GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| |||| | | | |||||| ||| ||||||||| ||||||||| ||||| Sbjct 6463 TCATTTTTCAAAATATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCC 6404 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| |||| Sbjct 6403 AACTCACGTACCACTTTAATTGGCGAACAGCCAAACCCTTGGAACCTTCTTCAGCTCCAG 6344 Query 256 GATGAGACGAGCCGACATCG 275 |||| || ||| |||||||| Sbjct 6343 GATGTGATGAGTCGACATCG 6324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780785756988