Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq47 273 5e-71 seq427 127 5e-27 >seq47 Length=279382 Score = 273 bits (302), Expect = 5e-71 Identities = 305/410 (74%), Gaps = 32/410 (8%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||| || ||| ||||| |||| |||||||||||||||| |||||||| |||||||| Sbjct 78520 TTTACAATCCTAAGACCTTCATCATTCACGCGGCATGGCTGCGTCAGGCTTTCGCCCATT 78461 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | |||| |||||||||||||||||||||||||||| ||| |||||||||||| ||| ||| Sbjct 78460 GCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATGT 78401 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||||||||||||| ||||||||||| |||| ||| ||||| | ||| Sbjct 78400 GGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTACCTCACCA 78341 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | ||| ||| || | || | || | ||| | || Sbjct 78340 ACTAGCTAATCAGACGCGGGCCGCTCCAATGGCGATA------AATCTTTCCCCCGAAGG 78287 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 | || || |||||||||| |||||| ||| | || ||| |||| Sbjct 78286 GC-----AC---ATCCGGTATTAGCTCAAGTTTCCCTGAGTTGTTCCGAACCAAAGGGCA 78235 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 |||||| |||||||||||||||||||| || ||||| | Sbjct 78234 CGTTCCCACGTGTTACTCACCCGTCCGCCACTAATC-CCGAAGGA--------------- 78191 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 78190 --TCCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCGCTCTGAG 78143 >seq427 Length=39484 Score = 127 bits (140), Expect = 5e-27 Identities = 147/194 (76%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | |||||||||| ||| ||| || |||| |||| |||| ||| || Sbjct 9926 CTTTACAACCTAATTAGCCTTCTTCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 9985 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||||||| |||| ||||||| ||| | Sbjct 9986 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTCTGGGCCGTATCTCAGTCCCAAT 10044 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| | |||||| ||| ||| || ||| | | |||| | | Sbjct 10045 GTGGCTGATCATTCTTTCAAATCAGCTAAAGATAATCGGCTTGGTAGTCTATTAAACTAC 10104 Query 183 CAACTAGC-TAATC 195 |||||| | ||||| Sbjct 10105 CAACTACCATAATC 10118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222376982208