Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq47 403 5e-110 seq427 232 2e-58 seq362 129 2e-27 seq40 104 7e-20 seq517 82.4 2e-13 >seq47 Length=279382 Score = 403 bits (446), Expect = 5e-110 Identities = 296/343 (86%), Gaps = 1/343 (0%) Strand=Plus/Plus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| | Sbjct 78321 CCCGCGTCTGATTAGCTAGTTGGTGAGGTAAAGGCTCACCAAGGCGACGATCAGTAGCTG 78380 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 |||||||| ||||| |||||||||| |||||||||||| ||||||||||||||||||| Sbjct 78381 GTCTGAGAGGATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGC 78440 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337 ||||||||||||| |||| |||||||| ||||||||| ||||| | ||||||||| ||| Sbjct 78441 AGCAGTGGGGAATCTTGCGCAATGGGCGAAAGCCTGACGCAGCCATGCCGCGTGAATGAT 78500 Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGG 397 ||||| ||| || | ||||| ||| || | ||| |||||||||||||| | || | Sbjct 78501 GAAGGTCTTAGGATTGTAAAATTCTTTCACCGGGGACGATAATGACGGTACCCGGAGAAG 78560 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 78561 AAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGCTCG 78620 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||| |||||||||||| ||||||| || | || |||| Sbjct 78621 GAATTACT-GGGCGTAAAGGGAGCGTAGGCGGACTGTTTAGTC 78662 >seq427 Length=39484 Score = 232 bits (256), Expect = 2e-58 Identities = 258/337 (77%), Gaps = 7/337 (2%) Strand=Plus/Minus Query 167 GATTA-GCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 ||||| | ||||||||| ||| | ||||||| ||| ||| |||| || ||| | Sbjct 10118 GATTATGGTAGTTGGTAGTTTAATAGACTACCAAGCCGATTATCTTTAGCTGATTTGAAA 10059 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 | ||||| |||||||||| ||||||| |||| ||| ||| | |||||||||||| Sbjct 10058 GAATGATCAGCCACATTGGGACTGAGATACGGCCCAGACTTTTTTAA-AGGCAGCAGTGG 10000 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-C 344 ||||| ||| |||||| || ||||| |||| |||||| ||| ||||| || |||||| Sbjct 9999 GGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCGAGTGAGTGAAGAAGGCTA 9940 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCC 404 | ||| |||||||||| || | ||||| || |||||| |||||| | | |||| || Sbjct 9939 ATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAAAAGAAGTTCC 9880 Query 405 GGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||| || |||||||||||||||||||||||| || || ||| |||| |||||| Sbjct 9879 GGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTCGGAATG 9821 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | | ||||||||| || ||||||||||| |||||| Sbjct 9820 A-TTAGGCGTAAAGAGTTTGTAGGTGGTTTTTTAAGT 9785 >seq362 Length=57719 Score = 129 bits (142), Expect = 2e-27 Identities = 158/211 (75%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 230 GATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAA 289 |||| |||||||||| ||| |||||||| ||| ||| | ||| ||||||| | || Sbjct 53048 GATCAGCCACATTGGGACTTAGACACGGCCCAGACTTTTTTAA-AGGAAGCAGTGAGAAA 53106 Query 290 TATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGG 349 | ||| | |||| || |||| |||| ||||| ||| |||| |||| |||| Sbjct 53107 TTTTGGATAATGAGCGGAAGCTTGATTTAGCAATACCGAGTGAATGATGGAGGCTAAATA 53166 Query 350 -GTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCT 408 || |||||||||| || | ||||| || |||||| |||||| | | |||| |||||| Sbjct 53167 AGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAAAAGAAGTTCCGGCT 53226 Query 409 AACTAC--GTGCCAGCAGCCGCGGTAATACG 437 || ||| ||||||||||||||||||||||| Sbjct 53227 AA-TACCCGTGCCAGCAGCCGCGGTAATACG 53256 >seq40 Length=297520 Score = 104 bits (114), Expect = 7e-20 Identities = 131/175 (75%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 303 GCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCT-TCGGGTCGTAAAGCTC 361 || ||||| |||| |||||| ||| ||||| |||| | || | | | ||||||||| Sbjct 261985 GCGAAAGCTTGATCCAGCAATACCGAGTGAGTGATGGAAGCTAATTAGCTTGTAAAGCTC 261926 Query 362 TGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGA-AGCCCCGGCTAACTACGTGCCA 420 | || | || || || |||| | |||||||| || | || |||||||| | ||||||| Sbjct 261925 TTTCATTAAAGAGGAAAATGGCAGTACTTGAA-AGTATAGTTCCGGCTAATTCCGTGCCA 261867 Query 421 GCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAA 475 ||||||||||||||||| || || ||| |||| | |||| | | |||||||| Sbjct 261866 GCAGCCGCGGTAATACGGTTGGAGCGAGCATTATTCAGAATGA-TCAGGCGTAAA 261813 >seq517 Length=20705 Score = 82.4 bits (90), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 404 CGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAAT 461 ||||||| ||| ||||||||||||||||||||||| || || ||| |||| |||||| Sbjct 9607 CGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTCGGAAT 9665 Query 462 TACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | | ||||||||| || ||||||||| | |||||| Sbjct 9666 GA-TTAGGCGTAAAGAGTTTGTAGGTGGTCTTTTAAGT 9702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497571800192