Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq47 430 3e-118 seq427 167 6e-39 seq517 87.8 4e-15 >seq47 Length=279382 Score = 430 bits (476), Expect = 3e-118 Identities = 336/400 (84%), Gaps = 2/400 (1%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 78557 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTG 78616 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 |||||||||||||||||||||| ||||||| || | || ||||||||||||||| | Sbjct 78617 CTCGGAATTACTGGGCGTAAAGGGAGCGTAGGCGGACTGTTTAGTCAGAGGTGAAAGCCC 78676 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 | ||||||||| || | ||| ||||| |||| | || |||| | | || || | ||| Sbjct 78677 AGGGCTCAACCTTGGAATTGCCTTTGATACTGGCAGTCTTGAGTACGGAAGAGGTATGTG 78736 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||| ||| ||||||| |||||||| |||||||||| ||| |||||||||||||||||||| Sbjct 78737 GAACTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTGGCGAAGGCG 78796 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 | | |||| | || |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 78797 ACATACTGGTCCGTTACTGACGCTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 78856 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 ||||||||||||||||| ||||||||||| | |||| |||||| |||| || || Sbjct 78857 ACCCTGGTAGTCCACGCTGTAAACGATGAGTGCTAGTTGTCGGCAGGCATGCCTG--TCG 78914 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| |||||| |||||| |||| | ||| ||||||||||| Sbjct 78915 GTGACGCAGCTAACGCATTAAGCACTCCGCCTGGGGAGTA 78954 >seq427 Length=39484 Score = 167 bits (184), Expect = 6e-39 Identities = 249/347 (72%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGG 58 ||||| | | |||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 9898 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 9840 Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAG 118 || ||| |||| |||||| | | ||||||||| || ||||||||||| |||||| | Sbjct 9839 GCGAGCATTATTCGGAATGATTAGGCGTAAAGAGTTTGTAGGTGGTTTTTTAAGTTGAAA 9780 Query 119 GTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGG- 177 | | | || ||||||| | ||| |||||| || |||| | Sbjct 9779 GAAACAAATTAAAGCTCAACTTTATACATTTTTTCAAAACTGATAAACTCGAGTATAAAT 9720 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || | ||||||| ||| || || | | |||| ||| |||| ||| ||||| | | Sbjct 9719 AGAGGGTAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAAGATCGA 9660 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 ||||||||| | |||| | || |||||||||||| ||||||| |||| ||| | Sbjct 9659 CGGCGAAGGCAATTACCTGGG-TATATACTGACACTGAGAAACGAAAGCTTGGGTAGCGA 9601 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 || ||||||||||||| ||||||||| || ||||||||||| | ||| Sbjct 9600 ACGGGATTAGATACCCCGGTAGTCCATGCTGTAAACGATGAGTGCTA 9554 >seq517 Length=20705 Score = 87.8 bits (96), Expect = 4e-15 Identities = 79/97 (81%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 19 CGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAAT 76 ||||||| ||| ||||||||||||||||||||||| || || ||| |||| |||||| Sbjct 9607 CGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGAGCGAGCATTATTCGGAAT 9665 Query 77 TACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 | | ||||||||| || ||||||||| | |||||| Sbjct 9666 GATTAGGCGTAAAGAGTTTGTAGGTGGTCTTTTAAGT 9702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203177343744