Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq559 260 3e-67 seq51 260 3e-67 seq284 150 3e-34 seq293 118 2e-24 seq558 114 2e-23 seq22 107 4e-21 seq212 86.0 1e-14 >seq559 Length=16282 Score = 260 bits (288), Expect = 3e-67 Identities = 214/260 (82%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | ||||||| |||||||||||||||||| Sbjct 9312 CTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGTCTG 9371 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 9372 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATAT 9431 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||| || |||||||||||||||||| || ||||||| |||||||| | Sbjct 9432 AACCTTGATCGATAGGTCTGGGTAATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGT 9491 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| | |||| |||||||||| |||||||| || ||||||||| ||||||| Sbjct 9492 TGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAATGCAAGTCATCAGCTTGCGTTGA 9551 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 9552 TTACGTCCCTGCCCTTTGTA 9571 >seq51 Length=275480 Score = 260 bits (288), Expect = 3e-67 Identities = 214/260 (82%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | ||||||| |||||||||||||||||| Sbjct 25133 CTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGTCTG 25074 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 25073 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATAT 25014 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||| || |||||||||||||||||| || ||||||| |||||||| | Sbjct 25013 AACCTTGATCGATAGGTCTGGGTAATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGT 24954 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| | |||| |||||||||| |||||||| || ||||||||| ||||||| Sbjct 24953 TGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAATGCAAGTCATCAGCTTGCGTTGA 24894 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 24893 TTACGTCCCTGCCCTTTGTA 24874 Score = 260 bits (288), Expect = 3e-67 Identities = 214/260 (82%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | ||||||| |||||||||||||||||| Sbjct 38522 CTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGTCTG 38463 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 38462 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATAT 38403 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||| || |||||||||||||||||| || ||||||| |||||||| | Sbjct 38402 AACCTTGATCGATAGGTCTGGGTAATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGT 38343 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| | |||| |||||||||| |||||||| || ||||||||| ||||||| Sbjct 38342 TGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAATGCAAGTCATCAGCTTGCGTTGA 38283 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 38282 TTACGTCCCTGCCCTTTGTA 38263 Score = 260 bits (288), Expect = 3e-67 Identities = 214/260 (82%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | ||||||| |||||||||||||||||| Sbjct 57428 CTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGTCTG 57369 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 57368 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATAT 57309 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||| || |||||||||||||||||| || ||||||| |||||||| | Sbjct 57308 AACCTTGATCGATAGGTCTGGGTAATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGT 57249 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| | |||| |||||||||| |||||||| || ||||||||| ||||||| Sbjct 57248 TGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAATGCAAGTCATCAGCTTGCGTTGA 57189 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 57188 TTACGTCCCTGCCCTTTGTA 57169 >seq284 Length=90265 Score = 150 bits (166), Expect = 3e-34 Identities = 141/178 (79%), Gaps = 1/178 (1%) Strand=Plus/Minus Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| |||||||| || ||| Sbjct 64087 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATATAACC 64028 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||| || |||||||||||||||||| || ||||||| |||||||| ||||| Sbjct 64027 TTGATCGATAGGTCTGGGTAATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGTTGCA 63968 Query 253 ATTAT-TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||| | |||| |||||||||| |||||||| || ||||||||| |||||||| Sbjct 63967 ATTTTCAAGTCTTGAACGAGGAATTCCTAGTAAATGCAAGTCATCAGCTTGCGTTGAT 63910 >seq293 Length=87265 Score = 118 bits (130), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||||| || |||||||| | ||||| | |||||||| |||| |||||||||||| Sbjct 50274 GGAAGTT-GAAACAATAACAAATTTGTGACGT--TTAGATGTCCTGGACCGCACGCGCGC 50218 Query 163 TACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA 222 |||||||| ||||| || || ||||| || |||||||||||| |||| Sbjct 50217 TACACTGATGCGTTCAACGTGTATATAGCCTTGATCGATAGGTCTGGGTAAATTTGTGTG 50158 Query 223 ACTCTG--TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATG-CCT 279 | || ||| ||| |||||||| |||||||| || |||| || ||||| | | Sbjct 50157 GATGTGCATCGCGCTAGGGATAGACTGTTGCAATTTTTAGTCTTGAA--AGGAAAGTTTT 50100 Query 280 AGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| || ||||||||| | ||||||||||| || ||||||||| Sbjct 50099 AGTAAATGCAAGTCATCAGCTTGTTTTGATTACGTCTCTACCCTTTGTA 50051 >seq558 Length=16345 Score = 114 bits (126), Expect = 2e-23 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| |||||||| || ||| Sbjct 13521 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATATAACC 13580 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||| || |||||||||||||||||| || ||||||| |||||||| ||||| Sbjct 13581 TTGATCGATAGGTCTGGGTAATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGTTGCA 13640 Query 253 ATT 255 ||| Sbjct 13641 ATT 13643 >seq22 Length=393590 Score = 107 bits (118), Expect = 4e-21 Identities = 163/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||||| || |||||||| || ||||| | |||||||| |||| |||||||| ||| Sbjct 383720 GGAAGTT-GAAACAATAACAAGTTTGTGACGT--TTAGATGTCCTGGACCGCACGCACGC 383776 Query 163 TACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA 222 |||||||| ||| |||| || ||||| || ||||||||||| | |||| Sbjct 383777 TACACTGATGCGTTCAATGAGTATATAGCCTTGATCGATAGGTCTGGGTACTTTTGTGTG 383836 Query 223 ACTCTG--TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280 || || ||||||| |||||||| ||||| | || |||| || ||| || ||| Sbjct 383837 GCTGTGCATCGTGCTAGGGATAGACTGTTGCAGATTTTAGTCTTAAAAGAGAAAGTTCTA 383896 Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| || ||||| | | || |||||||| || ||||||||| Sbjct 383897 GTAAATGCAAGTCAT---CTTGTTTTAATTACGTCTCTACCCTTTGTA 383941 >seq212 Length=129902 Score = 86.0 bits (94), Expect = 1e-14 Identities = 181/266 (68%), Gaps = 13/266 (5%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTC---AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||| | |||||||||| || | || || | || || | |||||||||| ||||| Sbjct 99102 CTTCCTTGAGGGACTATTGGGTAGTTAAACCAAAAAAATTTGGGGGCAATAACAAGTCTG 99043 Query 129 TGATGCCCT-TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187 ||| | ||| ||||| | ||||||| ||||||| ||||||||| |||||||| | Sbjct 99042 TGACGTCCTATAGATATCCTGGGCCACACGCGCACTACACTGATGCGTTCAACGAGTATA 98983 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT--CGTGCTGGGGATAGAG 245 | | ||| | |||||||||| |||||| | | ||| || | | |||| ||| Sbjct 98982 T-AGCTTCATCAATAGGTCTGGGTTATCTTGCGTAGATGTGTATCGCGTTAGGGAAAGAC 98924 Query 246 CATTGCAATTATTGCTCTTCAACG------AGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 |||||||| | || || | || ||| |||| || || ||||||||| Sbjct 98923 TGTTGCAATTTCTAGACTAGAAAGCCCTAAAGAAATTTCTAGAAAATGCAAGTCATCAGC 98864 Query 300 ACGCGTTGATTACGTCCCTGCCCTTT 325 | |||| ||||||||||| ||| Sbjct 98863 TTGTGTTGTCAACGTCCCTGCCATTT 98838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947182164224