Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq47 282 1e-73 seq1663 143 9e-32 >seq47 Length=279382 Score = 282 bits (312), Expect = 1e-73 Identities = 362/486 (74%), Gaps = 15/486 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC--AGT-CGCTGGGTGTAGACCCGAAACCAAGTGATCTACCC 58 |||||| ||| ||||||| ||| || | || |||||||||||| |||||||| || Sbjct 80906 CGAGTCTGAATAGGGCGAATAAGTACGTCGCATGACGACCCGAAACCAGGTGATCTATCC 80965 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||| |||| ||||||| |||||||| ||||||| ||||||| ||||||||||| Sbjct 80966 ATGAGCAGGTTGAAGGTTGGGTAACACCAACTGGAGGACCGAACCGGTGAATGTTGAAAA 81025 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 ||| |||||| ||||| |||||||||||||| || ||||| |||| ||||||||||| Sbjct 81026 ATTCTCGGATGACTTGTGGATAGGGGTGAAAGGCCAATCAAACCTGGACATAGCTGGTTC 81085 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTCA-AGTATCACCATCGGGGGTAGAGCACTGTTA 237 || ||||||||||||||||||||||||| | | || ||||||||||||||| | Sbjct 81086 TCCGCGAAAACTATTTAGGTAGTGCCTCAGACGGACTCCTCGGGGGGTAGAGCACTG-AA 81144 Query 238 TGGCTAGGGGGTCATTGCGA-CT-TACCAAACCATTGCAAACTCCGAATGCGCATCAGTT 295 ||| | | || | |||| || |||||| | |||||||||||| | | || Sbjct 81145 TGG--ATGCGGGCGGCGCGAGCTGTACCAATTCTAATCAAACTCCGAATACCCGAGAGAG 81202 Query 296 TTA-CCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGG 354 || | | | || | ||| ||||||||| |||||| | ||| || || || Sbjct 81203 ATATCTGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCTA 81260 Query 355 ACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAG 414 || |||| |||||||||| || | ||||||| | ||||| || | ||||| | Sbjct 81261 ACCATCATCTAAGGCCCCCAAGTACTGGCTAAGTGGGA--AACGATGTGGGTTTGCTTTG 81318 Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 ||| | ||||||||||||| |||||||||| ||||||||||| ||||||||||||||| Sbjct 81319 ACAACCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAACAGCTCACTG 81377 Query 475 GTCGAG 480 ||| || Sbjct 81378 GTCAAG 81383 >seq1663 Length=1314 Score = 143 bits (158), Expect = 9e-32 Identities = 308/450 (68%), Gaps = 9/450 (2%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||||| ||| |||| ||||| || |||| Sbjct 913 AGACCCGAAACTGAGTGATCTAACCATGAACAGATTGAAAAATAGGTAAAACTGTTTGGA 854 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 853 GGATCGAACTCACATATGTGGCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 794 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || |||||| || |||||||||| || ||||| ||||| | |||| || | | ||| Sbjct 793 AATCAAACTCAGAGATAGCTGGTTTTCCACGAAATCTATTGAAGTAGAGCATTTAAAATC 734 Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC 273 | ||||||||||||| | |||| ||||| | |||||| ||| ||| Sbjct 733 TTTTTTTGGGGTAGAGCACTCGTTGAGCTAAGGGGT-GTAAAAACTTACTAAATTCTTGG 675 Query 274 AAACTCCGAATGCGCATCAGTTTTACCGCGGGAGTGAGGGCAT-GGGTGCTAAGGTCCGT 332 ||||||||||| | | | ||| || | | ||| || ||||||||| | Sbjct 674 AAACTCCGAATACAAAAAAACGTTATTTAAATAGACA-GACATCAGGCGCTAAGGTCTTT 616 Query 333 GCCCGAGAGGAGAAGAATCCGGACT-ATCAGCTAAGGCCCCGAAATGACA-GCTAAGTTA 390 | ||||| || | || || | ||| ||||||| | | |||| | | |||||| | Sbjct 615 TGTCAAGAGGGAAACAGCCCAGATTGATC-GCTAAGGTCTCTAAATAATATTCTAAGTGA 557 Query 391 AACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATT 450 || || ||||| | | |||| | | | || |||||||||||||||| | || Sbjct 556 AA--AAGGAAGTAAAAAAATCATGACAACCAACAGGTAGGCTTGGAAGCAGCCA-CCCTT 500 Query 451 TAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||| |||||| |||||| | ||| || Sbjct 499 TAAAGAAAGCGTAATAGCTCATTGGTCTAG 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689568184832