Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq91 300 5e-79 seq1223 82.4 2e-13 seq205 82.4 2e-13 seq359 78.8 3e-12 seq48 78.8 3e-12 seq47 75.2 4e-11 >seq91 Length=216879 Score = 300 bits (332), Expect = 5e-79 Identities = 212/240 (88%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 268 TCACAAA-GTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCA 326 ||| ||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 33846 TCAAAAACGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTCTCCCCGCTGATTTTCCCA 33787 Query 327 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386 || ||||| || || |||||| |||| ||| ||||||||||||||||| ||||||| | Sbjct 33786 AGTCCGTTACCCTG-CTGTGGGTTCGTTAGTCAGTAGATAGGGACAGTGTGAATCTCATC 33728 Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 446 ||||||||||||| |||||| | |||||||||||||| |||||||||||| ||||| ||| Sbjct 33727 AATCCATTCATGCACGTCACCAGTTAGATGACGAGGCCTTTGGCTACCTTGAGAGATTCA 33668 Query 447 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 506 || |||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 33667 TAATTACTCCCGCTGTTTACCCGCGCTTGGTTGAATTACTTCACTATGACATTCAGAGCA 33608 >seq1223 Length=2454 Score = 82.4 bits (90), Expect = 2e-13 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 46 CCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCC 100 ||||||||||| || ||||| ||||||||||||||||||||||||||||||||| Sbjct 2454 CCTTAGGACACATGTGTTATCATTTAACAGATGTGCCGCCCCAGCCAAACTCCCC 2400 >seq205 Length=132973 Score = 82.4 bits (90), Expect = 2e-13 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 38 TGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTC 97 |||| | ||||||||| |||| ||||| |||||||||||||||||||||||||||||| Sbjct 25193 TGAGCTCACCTTAGGACTCCTGTGTTATCATTTAACAGATGTGCCGCCCCAGCCAAACTC 25252 Query 98 CCC 100 ||| Sbjct 25253 CCC 25255 >seq359 Length=58057 Score = 78.8 bits (86), Expect = 3e-12 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 324 CCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGG 376 ||||| ||||||||||| |||||| ||||||||| |||||||||||||||||| Sbjct 7901 CCAAGTCCGTTCCCTTGACTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGG 7849 >seq48 Length=277641 Score = 78.8 bits (86), Expect = 3e-12 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | |||||| |||| || | ||| Sbjct 245230 CTTTTGTTCCACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGAACACTTGTGCTATC 245289 Query 67 GTTTAACAGATGTGCCGCCCCAGCCA 92 ||||| ||||| || |||||||||| Sbjct 245290 ATTTAAAAGATGCGCTGCCCCAGCCA 245315 >seq47 Length=279382 Score = 75.2 bits (82), Expect = 4e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||||||| | |||||| |||||| ||| ||| | ||| ||| ||| |||| Sbjct 82133 GACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTC 82074 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || || |||||||| |||||||||||| | |||| Sbjct 82073 GCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCTGGGCTT 82028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635169209184