Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq47 379 7e-103 seq427 185 3e-44 >seq47 Length=279382 Score = 379 bits (420), Expect = 7e-103 Identities = 425/566 (75%), Gaps = 23/566 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||||||| ||||||||||||| || ||| ||| || ||||| || ||| |||| | Sbjct 82505 TCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCGACGACC-GATTTC 82447 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| | ||||| ||| | | |||||||||||||| ||||||||| | ||||||||| Sbjct 82446 CGACCGGTCTGAGCCCACCATCGCGCGCCTCCGTTACACTTTGGGAGG-CGACCGCCCCA 82388 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCA 179 || ||||| ||| ||| || |||||| |||| ||| | ||||| ||||||| || Sbjct 82387 GTCAAACTGCCCGCCACGCCATGTCCCGGACCCGGATAACGGGCCGCGGTTAGACGTCAG 82328 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 | || | || |||||||||||| | | |||||| ||| ||| | | |||||| Sbjct 82327 CAACAATAAGGGTGGTATTTCAAGGATGGCTCCACCGGAACTGGCGCCCCGGTTTCATAG 82268 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 ||||||||||||||||||| || | || ||||| | ||||| ||| ||||| | Sbjct 82267 CCTCCCACCTATCCTACACATGTTGCTGCTAACGCCAAGGCGAAGCTGCAGTAAAGGTTC 82208 Query 300 CG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 |||||||| |||| ||||| ||| | ||||||| || | | | ||||||| | Sbjct 82207 ATAGGGTCTTTCCGTCTGACCGCGGGAACCCCGCATCTTCACGGGGAATTCAATTTCGCT 82148 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 | ||||||| | ||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 82147 GAGCCTGTGCTGGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 82088 Query 419 CGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 82087 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCTGGGCTT 82028 Query 479 CAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACC 538 ||||| || | || ||| |||| ||||||||| ||||| Sbjct 82027 CAATT-----------------CGGAGCTTG--CACCCCTCCTTTTAACCTTCAGGCACC 81987 Query 539 GGGCAGGCGTCAGTCCGTATACCTCG 564 ||||||||||||| || ||||| ||| Sbjct 81986 GGGCAGGCGTCAGACCCTATACGTCG 81961 >seq427 Length=39484 Score = 185 bits (204), Expect = 3e-44 Identities = 296/419 (71%), Gaps = 17/419 (4%) Strand=Plus/Minus Query 68 CTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACT 127 ||||| ||||||| | |||||||||| ||| ||||| | |||||||||| ||||| Sbjct 6120 CTGAGCTTACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACT 6062 Query 128 ACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTC 187 ||| |||| ||||||| || | | || |||| ||| | | | Sbjct 6061 ACCAACCATACACTGTCT---------ATTTTAGTA-AATATTAGTTATTTATTTTAATA 6012 Query 188 AGAGTGGTATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCATA--GTCTCC 244 ||||||||||||||| | || |||| |||||||| ||| || | | | Sbjct 6011 AGAGTGGTATTTCAAGATTATCTAAACAATTTACTAGCGTAAAG--ATCTTAACGATTAC 5954 Query 245 CACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGG 303 ||| ||| ||||||| | | ||| ||||| ||| | |||| ||||| | |||| Sbjct 5953 CACTTATACTACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGG 5894 Query 304 GTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCC 363 |||||| |||| | ||| ||||||| || || | ||| ||||| | | | Sbjct 5893 GTCTTTCCGTCTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGTC 5834 Query 364 TGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACA 423 | | | |||||||| ||| |||||||| |||||| ||||||||||||||||||||||| Sbjct 5833 TATATTGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACA 5774 Query 424 AGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAAT 482 ||||||||||||||||||||| || | |||||| ||||||||||||||| ||||||| Sbjct 5773 AGGAATTTCGCTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCAAT 5715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702367943808