Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq51 444 2e-122 seq559 215 2e-53 seq212 194 5e-47 seq1251 120 9e-25 seq259 120 9e-25 seq270 111 5e-22 seq205 105 2e-20 seq1435 104 7e-20 seq78 96.9 1e-17 seq21 96.9 1e-17 seq67 87.8 5e-15 seq467 78.8 3e-12 >seq51 Length=275480 Score = 444 bits (492), Expect = 2e-122 Identities = 415/517 (80%), Gaps = 23/517 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| | || ||||| | || ||||||||||||||||| Sbjct 106575 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 106517 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| || || |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 106516 TCCCTGTATCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 106457 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||||| Sbjct 106456 TTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTAAATGCCATGGT 106397 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | |||||||||| |||| |||||||||||||| | | || ||||| || Sbjct 106396 TGGCCCATTTCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGATTTATCGC--GC 106339 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA----AGGAGCCCCGAAG--GG 293 ||| ||||| || | ||||||||| ||| || | || ||||||| | Sbjct 106338 AAAAG----CGCGATCCG-CACATTATTATGACTCAACACAATACTAG-CCCGAAGACTG 106285 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATG 348 |||||| ||| ||||||||||| | ||| |||| ||| |||| ||| ||||| Sbjct 106284 CGTTGG-TTTCAATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGGATTTATGCATG 106226 Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAA 408 ||||||||||||| |||| |||||| |||| |||||||||||||||| | | || |||| Sbjct 106225 TATTAGCTCTAGAGTTACTACGGTTTTCCAAGTAGTAAGGTACTATCGAGTGGACTATAA 106166 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCAT 467 ||||| ||||||| ||||||| |||||| ||| | | ||| ||| |||||||||||||| Sbjct 106165 CTGATATAATGAGATATTCGCACTTTCACAGTACAAATTTGTTTAAACTTAGACATGCAT 106106 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| ||||||||||||| ||||| ||||||||| Sbjct 106105 GGCTTAAACTTTGAGACAAGCGTATGAGTACTGGCAG 106069 >seq559 Length=16282 Score = 215 bits (238), Expect = 2e-53 Identities = 154/176 (88%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||||| ||||||||||||| || || ||||||| | |||| ||||||||||||||||| Sbjct 244 TATTTAT-GTCACTACCTCCCTGTATCAGGATTGGATTATTTACGCGCCTGCTGCCTTCC 186 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||| | ||||||||||| || | || ||||||| |||||||||| Sbjct 185 TTGGATGTGGTAGCCGTTTTTAAGGCTCCCTCTTCGAAGTCAAACCCTACTTCCCCGTTA 126 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 || ||| || |||||||||||| | |||||||||| |||| |||||||||||||| Sbjct 125 CCTGTTAATGCCATGGTAGGCCCATTTCCTACCATCCAAAGCTGATAGGGCAGAAA 70 >seq212 Length=129902 Score = 194 bits (214), Expect = 5e-47 Identities = 353/504 (70%), Gaps = 21/504 (4%) Strand=Plus/Plus Query 4 CTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACCTCC 62 |||||| ||||| | |||||||| ||||| | | |||||||||| ||| ||||| Sbjct 21599 CTCATTTCAATTGCCTGACCCAAA-GAGCCAGCGCGTTGTTATTTATTGTAACTGCCTCC 21657 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 | || || ||||| ||||| || ||||||||| || |||| ||||||| || | | ||| Sbjct 21658 CTGTATCAGGATTCGGTAACTTACGCGCCTGCAGCATTCCGTGGATGTTGTTGTCATTTT 21717 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 | ||||||||||||| ||||| || || || || || |||| ||||| ||| Sbjct 21718 TGAGGCTCCCTCTCCAGAATC-AATCCGAA-ACCATATTGTCCGTCACAGCCATGACAGG 21775 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCA 242 || |||| || |||| |||| ||| | |||||||| || | || ||| | Sbjct 21776 CCCGTATCATAACATCCAAAGCTGAAAAGGCAGAAACTTAACCGATTTATC----ACATT 21831 Query 243 AGGCCATGCGATTCGTTAAGTTATTATGAATC-ACCAAGGAGCCCCGA-AGGGCGTTGGT 300 || | |||||| | | |||||| |||| || || | ||| | | || || | Sbjct 21832 AGAC--TGCGATCCTTACAGTTATAATGACTCAACGCAATAGCTTAAAGACTGCATTCG- 21888 Query 301 TTTTTATCTAATAAAT-----ACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGC 355 | | | |||||||| | ||| | || ||| | | ||| || ||||||||| Sbjct 21889 -TCTACTTTAATAAATGCTAGCCGCCCGATTCGGAGTTGAGTATTTGCGCTTGTATTAGC 21947 Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 |||||| || | | || |||| ||||||||||||||| ||| || |||| |||||| Sbjct 21948 TCTAGAGCTA-AAAGATTGTCCAAGTAGTAAGGTACTATGGAATGGACTATAAATGATTT 22006 Query 416 AATGAGCCATTCGCAGTTTCACTGTATAG-ATTGCTTATACTTAGACATGCATGGCTTAA 474 |||| |||||||||| || ||| | || |||| ||| ||| ||||||||| | || || Sbjct 22007 AATGGGCCATTCGCACTTCCACAAAACAGAATTGTTTACACTAAGACATGCAAGACTCAA 22066 Query 475 TCTTTGAGACAAGCATATGACTAC 498 ||| | ||||| | ||||||||| Sbjct 22067 TCTATCAGACAGACGTATGACTAC 22090 >seq1251 Length=2333 Score = 120 bits (132), Expect = 9e-25 Identities = 91/106 (86%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 387 GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA- 445 || |||||| | | || ||||||||| ||||||||||||||||||||||| ||| | | Sbjct 1218 GGGACTATCGAGTGGACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAT 1277 Query 446 TTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 491 ||| ||||||||||||||| ||||||||||||||| ||||||| || Sbjct 1278 TTGTTTATACTTAGACATGTATGGCTTAATCTTTGGGACAAGCGTA 1323 >seq259 Length=100270 Score = 120 bits (132), Expect = 9e-25 Identities = 91/106 (86%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 387 GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGAT 446 || |||||| | | || ||||||||| ||||||||||||||||||||||| ||| | || Sbjct 21519 GGGACTATCGAGTGGACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAT 21460 Query 447 T-GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 491 | | ||||||||||||||| ||||||||||||||| ||||||| || Sbjct 21459 TTGTTTATACTTAGACATGTATGGCTTAATCTTTGGGACAAGCGTA 21414 >seq270 Length=95235 Score = 111 bits (122), Expect = 5e-22 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| ||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||| Sbjct 85861 TATTTGTTGTCACTACCCCCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCC 85802 Query 103 TTGGATGTGGTAGC 116 |||||||||||||| Sbjct 85801 TTGGATGTGGTAGC 85788 >seq205 Length=132973 Score = 105 bits (116), Expect = 2e-20 Identities = 89/107 (83%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| | || ||||| | || ||||||||||||||||| Sbjct 74893 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 74835 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGG 106 |||| || || |||||||||||||| ||||||||||||||||||||| Sbjct 74834 TCCCTGTATCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGG 74788 >seq1435 Length=1750 Score = 104 bits (114), Expect = 7e-20 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| ||||||||||| ||| ||||| |||||||||||||| |||| |||||||||||| Sbjct 778 TATTTGTTGTCACTACCCCCCTGTGTCAGGATTGGGTAATTTACGCG-CTGCTGCCTTCC 720 Query 103 TTGGATGTGGTAGC 116 |||||||||||||| Sbjct 719 TTGGATGTGGTAGC 706 >seq78 Length=230812 Score = 96.9 bits (106), Expect = 1e-17 Identities = 63/68 (93%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 422 CCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTTTG 480 |||||||||||||||| ||| | ||| | ||||||||||||||||||||||||||||||| Sbjct 37113 CCATTCGCAGTTTCACAGTACAAATTTGTTTATACTTAGACATGCATGGCTTAATCTTTG 37172 Query 481 AGACAAGC 488 |||||||| Sbjct 37173 AGACAAGC 37180 >seq21 Length=395838 Score = 96.9 bits (106), Expect = 1e-17 Identities = 86/105 (82%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 335 GGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCC-ATGTAGTAAGGTACT 392 |||| |||| | |||||| ||||| |||||||| ||||||||| | |||||||||||| Sbjct 20237 GGGTATTTACGTATGTATGAGCTCAAGAATTACTTCGGTTATCCGAAGTAGTAAGGTACC 20178 Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 || | | || |||| |||| |||||||||||| |||||||||| Sbjct 20177 ATAGAGTGGACTATAATTGATATAATGAGCCATTTGCAGTTTCAC 20133 >seq67 Length=242904 Score = 87.8 bits (96), Expect = 5e-15 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 338 TTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATC 395 |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 118547 TTTTCTGCATGTATTAGCTCTAGAATTACTACGGTTATCCAAGTAGTAAGGTACTATC 118490 >seq467 Length=30116 Score = 78.8 bits (86), Expect = 3e-12 Identities = 100/135 (74%), Gaps = 12/135 (9%) Strand=Plus/Minus Query 335 GGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTA 393 |||| |||| | |||||| ||||||| |||||| |||||| || | |||||||||||| | Sbjct 19234 GGGTATTTACGTATGTATGAGCTCTA-AATTACTACGGTTTTCGAAGTAGTAAGGTACCA 19176 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTA 452 | | | | ||||||||| |||| |||||||||| || | | ||| || Sbjct 19175 TAGAGTGGGCTATAACTGATATAAT---------GCAGTTTCACAATACAAATTTGTTTT 19125 Query 453 TACTTAGACATGCAT 467 ||| ||||||||||| Sbjct 19124 TACATAGACATGCAT 19110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510371559168