Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001695595.1_202016-07-27] 1,883 sequences; 74,737,153 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 174 1e-38 >seq1 Length=763219 Score = 174 bits (192), Expect = 1e-38 Identities = 560/853 (66%), Gaps = 31/853 (4%) Strand=Plus/Minus Query 61090 TGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCC 61149 |||| |||||||| || || |||||||| || ||||| | ||||| ||||| || Sbjct 607730 TGGCAGATGTACAAGAAAGCTGAAGCTTCTTTTTGGACAGCTGAGGAACTCGATCTGGTG 607671 Query 61150 AAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTG 61209 | || |||| || |||| | | || | || | |||||||||| |||||| Sbjct 607670 CACGATCTGAAAGATTGGGCTAGCCTCACGGACAACGAGCGTTATTTCATTAAGCATGTG 607611 Query 61210 TTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTG--GAACGTTTCG 61267 | || |||||||| ||| ||||| || || ||||| ||| || ||| ||| | Sbjct 607610 CTCGCTTTCTTTGCTGCTAGTGACGGCATTGTGAATGAAAATCTAGCCATGAAT-TTTAG 607552 Query 61268 CGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGA 61327 | | || ||||| ||| | ||||| || || || ||||| || || || || || |||| Sbjct 607551 CA-ACGAAGTGCAGGTGCCAGAGGCTCGCTGCTTTTACGGGTTTCAAATCGCAATCGAGA 607493 Query 61328 ATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GA 61385 || | |||||||| ||||| || | || || ||||| || | || ||| | || Sbjct 607492 ATATACACTCGGAAGTGTACTCGCTTTTGATTGACACGTATATTAAAGACGCGATTGAGA 607433 Query 61386 ACGTGAACGAT-TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATT 61444 | | || || | | ||| |||||||| || || || | |||||| | | Sbjct 607432 AGG---ACCATCTACTACGTGCTATCGAGACTATCCCTTGCGTCACCAAAAAAGCGCACT 607376 Query 61445 GGGCCTTCAATTGGATCACCAGTACAACGG----CTACATTTGGTGAACGATTGCTGGCA 61500 |||| | || ||| | | | |||| || | | | ||||| | |||| Sbjct 607375 GGGCTCTGAAGTGGTGC----GATCCACGGGTCTCTTCCTATCCAGAACGGCTTTTGGCC 607320 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 ||||| | || || || | |||||| ||| || || | | ||||||||| | ||| Sbjct 607319 TTTGCTGCAGTTGAAGGCATTTTTTTCTCTGGCTCATTCTGCTCCATCTTTTGGCTCAAG 607260 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 || || || | ||||| ||||| | ||| || ||| | || || |||||||| Sbjct 607259 AAGCGCGGTTTAATGCCTGGTCTAAGCTTTTCAAACGAGCTTATTAGCCGGGACGAGGGT 607200 Query 61621 ATGCATTGTGATTTTGC-TG--TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCG 61677 ||||| || ||||| || ||||| || || || || |||| | | | | Sbjct 607199 ATGCACACGGACTTTGCGTGCCTTTTG-TACTCCAA----AT-TGGTCACCAAGCTGCCA 607146 Query 61678 GAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACT 61737 || | || ||| || || |||| || || || | || ||||| || || || | Sbjct 607145 GAATACCGCGTGCACGAAATCATTCGCGATGCTGTGGCGATTGAACACGAGTTCGTGCGT 607086 Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 ||| | | || ||| || || |||||||| | || || |||| | ||| |||||| Sbjct 607085 GACTCGCTCCCGGTCGAGCTGATTGGCATGAACTCGGGCCTCATGTGCCTGTACATTGAA 607026 Query 61798 TTTGTTGCCGACCGTCTG--TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAA 61855 ||||| || || |||||| || ||| | | |||| | |||||| || | || | Sbjct 607025 TTTGTGGCTGATCGTCTGCTTTACTCGCTGGGAGTATCCAA--GATCTACCATGCAAAGA 606968 Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915 ||||||| |||| ||||||||||| || || | ||||||||||| ||||| ||||||| Sbjct 606967 ACCCATTCGATTGGATGGACATGATCTCTCTCCAGGGCAAGACGAACTTTTTTGAGAAAC 606908 Query 61916 GTGTAGGCGACTA 61928 | || || || || Sbjct 606907 GCGTTGGAGAATA 606895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558876187120