Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq653 208 1e-51 seq1490 172 1e-40 seq100 73.4 8e-11 >seq653 Length=1731 Score = 208 bits (230), Expect = 1e-51 Identities = 271/346 (78%), Gaps = 28/346 (8%) Strand=Plus/Minus Query 10 CAGGGGG-GTGA-AATAGA-CCCTGAACCCGC-GCGCCTA-CAAGC-GGTCGGAGCCGAG 63 |||||| |||| |||||| ||||||| ||| | | || ||||| ||||||||| || Sbjct 1682 CAGGGGAAGTGACAATAGAACCCTGAAACCGGTGTACTTATCAAGCCGGTCGGAGCAGAC 1623 Query 64 TGATTCG-GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGT-CGTCACCAGCG 121 | ||| |||||||| ||||||||||||||||||||||||||||| | | || | || Sbjct 1622 TTGTTCCTGTGACGGC-TGCCTTTTGCATAATGAGCCTACGAGTTACTGCCTCTCTGGCC 1564 Query 122 A-GGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTT--AACAGGGCGACG 178 | ||||||| | || || | || |||||||| |||||||| || || ||||||| Sbjct 1563 AAGGTTAAGTGGTTAAGCCACGC-AGCCGAAGCGAAAGCGA---TTGGAATAGGGCGAT- 1509 Query 179 AGTTGGT-GGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAA-GTCGCG 236 ||| | || | ||||||||||||||||||||||||||| | ||||||||| || | Sbjct 1508 AGTAAGAAGGGGGTAGACGCGAAACCTTGTGATCTACCCATGGACAGGTTGAAGGTGCCC 1449 Query 237 GTAACGCGTGATGGAGGACCGAACCGGTAAA--CGTTGAAAAGTTTTCGGATGA-CTCGC 293 ||||| || ||||||| ||||||| |||| ||||||||||||| ||||||| || Sbjct 1448 GTAACAGGT--TGGAGGA-CGAACCGATAAAACCGTTGAAAAGTTTCCGGATGATCTGTG 1392 Query 294 GGGTAGG-GGTGAAAGGC-CAATCAAACTGGGAA-ATAGCTCGTAC 336 ||||||| |||||||||| |||||||||||||| | |||||||| Sbjct 1391 GGGTAGGAGGTGAAAGGCTAAATCAAACTGGGAATAAGGCTCGTAC 1346 >seq1490 Length=214893 Score = 172 bits (190), Expect = 1e-40 Identities = 234/324 (72%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| || ||||| | || ||||| || | ||| Sbjct 77263 AGGGGAGTGAAATAGATCCTGAAACCGTATGCATACAAACAGTGGGAGCGGACTTGTTCC 77322 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| ||| ||| || |||| Sbjct 77323 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTAGCAAGCTTAACC 77381 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || || || || ||||||||| | || ||||||| ||||| ||| Sbjct 77382 GATAGGGG------AGGCGTAGCGAAAGCGAGTCCGAATAGGGCGAT-AGTTGCTGGGTG 77434 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||| ||| | |||| ||||| |||||| | ||| Sbjct 77435 TAGACCCGAAACCAAGTGATCTATCCATGGCCAGGATGAAGGTTGGGTAACACCAACTGG 77494 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| ||||||| ||| |||||||| ||| |||||| | || |||||||||||||| Sbjct 77495 AGGTCCGAACCCACAAATGTTGAAAAATTTGGGGATGAGCTGTGGATAGGGGTGAAAGGC 77554 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 || |||||| |||||||||| || Sbjct 77555 TAAACAAACTTGGAAATAGCTGGT 77578 >seq100 Length=112360 Score = 73.4 bits (80), Expect = 8e-11 Identities = 131/190 (69%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 145 AGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGACGCGAAACCT 204 |||| ||||||||||||| | || || |||| ||| | ||||| |||| || Sbjct 25897 AGCCATAGTGAAAGCGAGCTTGAATAGAGCGAA-AGTCACTAATTATAGACCCGAACCCG 25839 Query 205 TGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGT 264 ||||||| ||| | |||| |||| ||| || | ||||| |||||||| Sbjct 25838 CTTGATCTAACCATGTCCAGGGTGAAACTTAGGTGACACTAAGGGGAGGCCCGAACCGAC 25779 Query 265 AAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGA 324 || |||||||| || ||||||| | || ||||||||||| ||||||| || ||| Sbjct 25778 TAATGTTGAAAAATTAGCGGATGAGGTGTGGTTAGGGGTGAAATGCCAATCGAAAGCGGA 25719 Query 325 AATAGCTCGT 334 ||||| || Sbjct 25718 GCTAGCTGGT 25709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972778938880