Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1732 273 3e-71 seq1571 268 1e-69 seq1731 242 6e-62 seq863 241 2e-61 seq151 237 2e-60 seq1767 217 2e-54 seq453 170 3e-40 seq1327 132 7e-29 seq87 111 2e-22 seq390 86.0 9e-15 >seq1732 Length=9078 Score = 273 bits (302), Expect = 3e-71 Identities = 205/237 (86%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || || ||||||||| ||| |||||||||||| | Sbjct 8526 GTACAAAGGGCAGGGACGTAATCAATGCAAG-TTGATGACTTGCGTTTACTAGGAATT-C 8583 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 ||||||||||| || |||| |||| ||||||||||| ||||||| | || |||||||| Sbjct 8584 CTCGTTGAAGATGAATAATTACAATCATCTATCCCCAGCACGATGCATGTTGCAAAGATT 8643 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||| | || | |||||| || ||| | || || ||||||||||||||||||||| Sbjct 8644 ACCCAGACTTATCAGTCAAGGTTGTAAACTTGATGCATGCATCAGTGTAGCGCGCGTGCG 8703 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTA 236 ||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| Sbjct 8704 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCGAACTTCCGTCGGCTA 8760 >seq1571 Length=97646 Score = 268 bits (296), Expect = 1e-69 Identities = 199/229 (87%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| || |||||||||||| | Sbjct 15149 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCATTTACTAGGAATT-C 15206 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||||| | |||||||| |||||||| | ||||||| |||| |||||| Sbjct 15207 CTCGTTCAAGACTGAAAATTGCAACAGTCTATCCCTAGCACGATGCGCATTCACAAGATT 15266 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| ||| |||||||||| ||||||||||||||||||||| Sbjct 15267 ACCCAGACCTATCGATCAAGGTTATATACTCGTTGAACGCATCAGTGTAGCGCGCGTGCG 15326 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 15327 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 15375 >seq1731 Length=8278 Score = 242 bits (268), Expect = 6e-62 Identities = 194/229 (85%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||| ||| |||||||||||| | Sbjct 3269 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACCCGCATTTACTAGGAATT-C 3212 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 |||||| |||| || ||||||||| ||||||||| ||||||| | |||| |||||| Sbjct 3211 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCTATCACGACACACATTTACAAGATT 3152 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| |||| ||||| | ||||| || | ||||||||||||||||||| Sbjct 3151 ACCCAGACCTTTCGGACAAGGAAA---ACTCGCTGCGTGTGTCAGTGTAGCGCGCGTGCG 3095 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||| |||||||||||||||||||||||||||||||| | ||||||| Sbjct 3094 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCCCCAACTTCC 3046 >seq863 Length=9128 Score = 241 bits (266), Expect = 2e-61 Identities = 222/258 (86%), Gaps = 25/258 (10%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAAC-GCGAGCTTGATGACTCGCGC-TTACTAGGAATT 58 |||||||||||||| || || ||||| ||||||| ||||||||||| ||||| |||| Sbjct 4717 GTACAAAGGGCAGG-AC-TA-TCAACAGCGAGCT-GATGACTCGCGGATTACTTAGAAT- 4663 Query 59 TCCTCGTTGAAGACC--AACAATTGCAATGATC-TATCC----CCATCACGATGAAATTT 111 ||||||||| ||| |||||||||||||||| ||||| ||||||||||||||||| Sbjct 4662 --CTCGTTGAA-ACCTAAACAATTGCAATGATCATATCCAACCCCATCACGATGAAATTT 4606 Query 112 CAAAGATTACCCGGACCT-GTCGGCCAAGGTGATAGACTCGTTGAA-TACAT-CAGTGTA 168 |||||||||||||| ||| |||| |||||| |||||||||||||| ||||| |||| || Sbjct 4605 CAAAGATTACCCGGGCCTTGTCG-CCAAGGCTATAGACTCGTTGAACTACATACAGT-TA 4548 Query 169 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCA-CAGACCTGTTATTGCCTCAAACTTC 227 || ||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct 4547 GC-CGCGTGC-GCCCAGAACATCTAAGGGCATCACCAGACCCTTTATTGCCTCAAACTTC 4490 Query 228 CGTGGCCTAAAAGGCCAT 245 | |||||||| |||||| Sbjct 4489 CTTGGCCTAAGCGGCCAT 4472 >seq151 Length=6618 Score = 237 bits (262), Expect = 2e-60 Identities = 187/220 (85%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| | Sbjct 6018 GTACAAAGGGCAGGGACGTAGTCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 5961 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||| ||| | || ||||||| ||||| || ||||| ||| || Sbjct 5960 CTCGTTGAAGAGCAAAAATTACAAAGCTCCATCCCCAGCACGACAAAGTTTCACAAGTTT 5901 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | | | |||| ||||| | |||||||| | |||||||||||||||||| Sbjct 5900 ACCCAGTCATTTCGGACAAGGGGCCCCACTCGTTGTCTCTGTCAGTGTAGCGCGCGTGCA 5841 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 219 |||| ||||||||||||||||||||||||||||||||||| Sbjct 5840 GCCCGGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 5801 >seq1767 Length=130814 Score = 217 bits (240), Expect = 2e-54 Identities = 188/229 (82%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||| ||||| ||||||| ||| ||||| | || |||||||||| | | Sbjct 12178 GTACAAAGGGCAGGAACGTAATCAACGCAAGCA-GATGATTTGCATTTACTAGGAACT-C 12121 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||| || ||||| | |||||||| |||||| | ||||||| |||| |||||| Sbjct 12120 CTCATTCAAGACTGATAATTGCAACAGTCTATCTTTAGCACGATGTGCATTCACAAGATT 12061 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||||||| |||||| ||| |||||||||| |||||||| |||||||| Sbjct 12060 ACCCAGACCTGTCGATCAAGGTTATATACTCGTTGAACGCATCAGTG-----CGCGTGCG 12006 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 12005 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 11957 Score = 120 bits (132), Expect = 5e-25 Identities = 168/231 (73%), Gaps = 11/231 (5%) Strand=Plus/Minus Query 5 AAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT-- 62 ||| ||||||||||| | |||| | |||| ||||||| || || |||| |||||| | Sbjct 56364 AAATGGCAGGGACGTTGACAACACAAGCT-GATGACTTGCATTTTCTAGAAATTTCTTTA 56306 Query 63 ---CGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA---AAG 116 | || || | | |||||||| ||| |||| | | |||| | | | ||| Sbjct 56305 GGGCTTTCTAGTCTAGAAATTGCAACAGTCTTTCCCTAACGCGATACACATCTACGCAAG 56246 Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 || |||| ||||| | | ||| | ||| |||||||||| ||||||||||| |||||| Sbjct 56245 ATAACCCAGACCTATTGATGAAGCT-ATATACTCGTTGAACGCATCAGTGTAGTGCGCGT 56187 Query 177 GCGGCCCAGAACATCTA-AGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 | ||||||| | ||||| ||| | |||||||| |||||||||| | || || Sbjct 56186 GTGGCCCAGGATATCTATAGGACGTCACAGACTTGTTATTGCCCCCAAATT 56136 >seq453 Length=12031 Score = 170 bits (188), Expect = 3e-40 Identities = 186/240 (78%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTT-GATGACTCGCGCTTACTAGGAATTT 59 ||||||||||||||||||||||| || |||| ||||| | | ||| ||||||| Sbjct 2043 GTACAAAGGGCAGGGACGTAGTCG--GCATGCTTTGATGAAGCATACCTACAAGGAATT- 2099 Query 60 CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGAT 118 ||||||| | |||||| |||| |||||||| |||||||||||| | |||| ||||| Sbjct 2100 CCTCGTTCATGACCAATAATTTCAATGATCAATCCCCATCACGTCAAGCATTCACAAGAT 2159 Query 119 TACCCGGACCTGTCGGCCAAGG-TGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 | || ||| |||| | || | ||||||| ||| | |||||||||||||||| Sbjct 2160 TCGCCAATCCTATCGGACCAGCATTGTAGACTCATTGTACCAGACAGTGTAGCGCGCGTG 2219 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAA 237 | ||| || |||||||||||||||||||||||||||||||| | |||||| | | |||| Sbjct 2220 CAGCCTAGGACATCTAAGGGCATCACAGACCTGTTATTGCCGC--ACTTCCTTCGGCTAA 2277 >seq1327 Length=71880 Score = 132 bits (146), Expect = 7e-29 Identities = 170/230 (74%), Gaps = 11/230 (5%) Strand=Plus/Minus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 ||||||||| || |||||| | || | || |||||| || ||||||| | |||| Sbjct 37762 TACAAAGGGTAGAGACGTAATTAAAACAAG----ATGACTTGCATTTACTAGAACTTTC- 37708 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA---AAGAT 118 || || ||||| || | ||||| |||||||| | ||||||| | || || | Sbjct 37707 TCTTTCAAGACTAAGATCTGCAACAGTCTATCCCTAGCACGATGCACAGCCACACAAAAG 37648 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||| ||||| ||| ||||| ||| |||| ||||| ||||||||||||| |||||| Sbjct 37647 TACCCAGACCTATCGATCAAGGCTATATACTCATTGAACGCATCAGTGTAGCGTGCGTGC 37588 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 || |||| |||||||| | ||||| || |||||||| || ||||||| Sbjct 37587 GGTCCAGGACATCTAA--ACGTCACAAACTTGTTATTGTTTC-AACTTCC 37541 >seq87 Length=14717 Score = 111 bits (122), Expect = 2e-22 Identities = 182/257 (71%), Gaps = 34/257 (13%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| |||||||||||| |||| |||| | |||| ||||| |||||||||||| | Sbjct 3860 GTACAAAAGGCAGGGACGTAATCAATGCGATATA-ATGAATCGCGATTACTAGGAATT-C 3803 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| | ||| ||| | ||||||| ||||| | | ||| ||| |||| Sbjct 3802 CTCGTTCAAGATGGA--ATTCCAAACAGCTATCCCTGTCACGTTAATGTTTGAAAAGATT 3745 Query 120 ACCCGGACCTGTC-GGCCAAGG----TGA--------------------TA--GACTCGT 152 ||| ||| | || |||| ||| || |||| || Sbjct 3744 TCCCACTCCTTTAAGGAGAAGGCCAGTGAACACCGAAGTATTCACATTGTACTGACTTGT 3685 Query 153 TGAATAC-ATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT 211 | | || | |||||||| ||||||| |||||| |||||||||||||||||||||||| Sbjct 3684 T-AGTATTAACAGTGTAGTACGCGTGCTGCCCAGGGCATCTAAGGGCATCACAGACCTGT 3626 Query 212 TATTGCCTCAAACTTCC 228 |||||||| |||||||| Sbjct 3625 TATTGCCTTAAACTTCC 3609 >seq390 Length=374559 Score = 86.0 bits (94), Expect = 9e-15 Identities = 156/225 (69%), Gaps = 20/225 (9%) Strand=Plus/Plus Query 2 TACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCC 61 ||||||||| || ||| | ||||||| |||| ||||||| | ||| ||||| Sbjct 82907 TACAAAGGGTAGCCACGAAATCAACGCAAGCT-GATGACTTG--------AGGGATTTC- 82956 Query 62 TCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTAC 121 ||| | |||| || ||||||| |||| || | ||||||| |||| | | || Sbjct 82957 TCGATTCAGACTAAGGATTGCAACAGTCTAATCCTAGCACGATGCGCATTCACAAAATAA 83016 Query 122 CCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC 181 |||| || || ||| | | |||| ||| | || |||| |||| |||| | Sbjct 83017 ----ACCTACCGATCATGGTTACATACTCATTGCA-ACGTCAG-----CGCGAGTGCCGT 83066 Query 182 CCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 ||||||||| ||||||||||| ||| |||||||||||| || || Sbjct 83067 CCAGAACATTTAAGGGCATCATAGATTTGTTATTGCCTCCAAGTT 83111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751984227975