Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq1731 132 3e-29 seq1732 129 3e-28 seq151 122 5e-26 seq1571 102 5e-20 seq1767 91.5 8e-17 seq863 82.4 4e-14 >seq1731 Length=8278 Score = 132 bits (146), Expect = 3e-29 Identities = 100/117 (85%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||| || ||||| | |||||| | || Sbjct 2741 GAACCCAAAGACTTTGATTTCTCATAAGGTGCTGATGGAGTCGCTA--ATAACACCCACC 2684 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 2683 AATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 2627 >seq1732 Length=9078 Score = 129 bits (142), Expect = 3e-28 Identities = 101/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTC-AAAATGATAACATCGCC 59 ||||||||||||||||||||||| |||||||| | |||| |||||| ||| | | Sbjct 64 GAACCCAAAGACTTTGATTTCTCATAAGGTGCGAATGAAGTCGAAAATG-CAACGTTCAC 122 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 123 TCATCCCTAGTCGGCATAGTTTATGGTTGAGACTACGACGGTATCTGATCGTCTTCGA 180 >seq151 Length=6618 Score = 122 bits (134), Expect = 5e-26 Identities = 100/120 (83%), Gaps = 5/120 (4%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||| |||||||||||||||| | ||||| |||| || |||||| ||||| Sbjct 5483 GAACCCAAAAACTTTGATTTCTCGTACCGCGCCGATCGAGCCAGTGAAATGAG--CATCG 5426 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| | |||||||||||||||| ||||||||||| ||||||||| ||||| ||||| Sbjct 5425 ACCGATTCGGAGTCGGCATAGTTTACTGTTAAGACTACAACGGTATCTAATCGTTTTCGA 5366 >seq1571 Length=97646 Score = 102 bits (112), Expect = 5e-20 Identities = 96/120 (80%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGAT--AACATCGC 58 ||||||||||||||||||||||| || ||||| || |||| | | ||| | Sbjct 15685 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTTAAGTAAACGACTG 15744 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTG-ATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| |||||||| ||| ||||||| Sbjct 15745 CCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTGAATCATCTTCGA 15804 >seq1767 Length=130814 Score = 91.5 bits (100), Expect = 8e-17 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGAT--AACATCGC 58 |||||||||||||| |||||||| || ||||| || ||||| | | ||| | Sbjct 11648 GAACCCAAAGACTTCGATTTCTCATACGGTGCTGACAAGGTCAATTTAAGTGAACGACTG 11589 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||| | ||||||||||||||| |||||||||||||| |||||| ||| |||||| Sbjct 11588 CCAATCTCGAGTCGGCATAGTTTATGGTTAAGACTACGATAGTATCTAATCAGCTTCGA 11530 >seq863 Length=9128 Score = 82.4 bits (90), Expect = 4e-14 Identities = 99/123 (80%), Gaps = 9/123 (7%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCA-AAATGATAACATCGC 58 ||||||||| ||||||||||| | |||| |||| |||| |||| ||| | | |||| Sbjct 4173 GAACCCAAAAACTTTGATTTC-CATAAG-TGCC-AGCGGAGTCCTAAAAGCAACCATCCG 4117 Query 59 CCGAT-CCCTAGTCGGCATA-GTTTACGGTTAA-GACTACGACGGTATCTGATCG-TCTT 114 | ||| |||| |||||||| ||||| |||| | ||||| ||||||||||||||| |||| Sbjct 4116 CTGATTCCCTGGTCGGCATGCGTTTATGGTTGACGACTAGGACGGTATCTGATCGTTCTT 4057 Query 115 CGA 117 ||| Sbjct 4056 CGA 4054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278394349350