Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1732 293 4e-77 seq151 289 5e-76 seq1731 273 4e-71 seq453 194 3e-47 seq1571 192 1e-46 seq863 178 2e-42 >seq1732 Length=9078 Score = 293 bits (324), Expect = 4e-77 Identities = 216/248 (87%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 ||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| Sbjct 427 CTTTTACTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTTTGCTATGAATACATTAGCAT 368 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 ||||||||| |||||| | ||||||||||||||||||||||||||| | |||||||| Sbjct 367 GGAATAATAATTTAGGACTT-CGGTTCTATTTTGTTGGTTTCTAGGACTGAAGTAATGAT 309 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 | ||||||||||| ||||||| |||||||| | ||||||||||||||| ||||| Sbjct 308 TGATAGGGATAGTTGGGGGTGCTAGTATTCAGCGGCCAGAGGTGAAATTCTCGGATTCGC 249 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||||||||||| ||||||||| |||||||||||||| ||| ||||||| |||||||| Sbjct 248 TGAAGACTAACTTATGCGAAAGCATTCACCAAGGATGTCTTCTTTAATCA-AGAACGAAA 190 Query 311 GTTAGGGG 318 ||| |||| Sbjct 189 GTTGGGGG 182 >seq151 Length=6618 Score = 289 bits (320), Expect = 5e-76 Identities = 220/257 (86%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 62 GGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG-CTCGAAT 120 ||| |||||||| ||||||||||||||||||||||||||||||||||| | | | ||||| Sbjct 5108 GGAACCAGGACTATTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCATAGGCCCGAAT 5167 Query 121 ACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCG 180 | ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || | Sbjct 5168 ATATTAGCATGGAATAACAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGAACTG 5227 Query 181 CCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTC 240 ||||||||||||| ||||| || |||||| | |||||| | ||||||||||||| Sbjct 5228 CCGTAATGATTAAAAGGGACAGCCGGGGGCATTAGTATTTGCACGCTAGAGGTGAAATTC 5287 Query 241 TTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||||| |||||| ||||||||||||| || ||||| |||||||||||||||| Sbjct 5288 TTGGATTGTGCAAAGACTTCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA 5347 Query 301 GTGAACGAAAGTTAGGG 317 ||||||| ||||||| Sbjct 5348 -AGAACGAAGGTTAGGG 5363 >seq1731 Length=8278 Score = 273 bits (302), Expect = 4e-71 Identities = 220/260 (85%), Gaps = 7/260 (3%) Strand=Plus/Plus Query 61 GGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC--TCGA 118 |||| || | | |||||| ||| ||| ||||||||||||||||||| | || | || Sbjct 2371 GGGACCCTCGTCATTTACTGTGAGCAAAATAGAGTGTTCAAAGCAGGCTTACGCCGTTGA 2430 Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178 ||||||||||||||||||||| ||||||| | | ||||||||||||||| || | Sbjct 2431 ATACATTAGCATGGAATAATAAGATAGGACCTTGG--TCTATTTTGTTGGTTA-TACT-C 2486 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 || ||||||||||||||||| ||| |||||| | |||||||||||||||||||||||| Sbjct 2487 CGAGGTAATGATTAATAGGGACAGTTGGGGGTATTCGTATTCAATTGTCAGAGGTGAAAT 2546 Query 239 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 |||||||||||| |||||| ||||||||||||||| || ||||||||||||||||||||| Sbjct 2547 TCTTGGATTTATGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAAT 2606 Query 299 CAGTGAACGAAAGTTAGGGG 318 || |||||||||||||||| Sbjct 2607 CA-AGAACGAAAGTTAGGGG 2625 >seq453 Length=12031 Score = 194 bits (214), Expect = 3e-47 Identities = 196/250 (78%), Gaps = 9/250 (4%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG---CTCGAATACATTAGCAT 130 ||||| ||||| ||||||| ||||||||||||||| || || ||||| ||||||| Sbjct 5003 TTTACCTTGAATAAATTAGGGTGTTCAAAGCAGGCTTTAAAGCCTTGAATAGTTTAGCAT 4944 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT--CTAGGACCGCCGTAATG 188 || ||||| ||||| ||| | | | | || || ||| | || || | | |||||| Sbjct 4943 GGGATAATGGAATACGACC--CTGGCCGAGTTCGTCGGTGTTACTCGG-CTGGGGTAATG 4887 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| ||||||||||| | ||||||||||||||||||||||||||| |||| Sbjct 4886 ATTAATAGAGATAGTCGGGGTCATTCATATTCAATTGTCAGAGGTGAAATTCTTAGATTC 4827 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 ||||||| |||| | ||||||||||| |||||||| | |||||||||| |||||| Sbjct 4826 TTTGAAGATGAACTGCAGCGAAAGCGTTTGACAAGGATGCTCTCATTAATCA-AGAACGA 4768 Query 309 AAGTTAGGGG 318 |||||||||| Sbjct 4767 AAGTTAGGGG 4758 >seq1571 Length=97646 Score = 192 bits (212), Expect = 1e-46 Identities = 192/244 (79%), Gaps = 9/244 (4%) Strand=Plus/Minus Query 81 TGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCATGGAATA 136 || ||||||||||||||| |||||||| || |||| ||||||||||||||| |||| Sbjct 16046 TGTAAAAATTAGAGTGTTTGAAGCAGGCGTTAGCTCATTTGAATACATTAGCATGAAATA 15987 Query 137 ATAGAATAGGACGTGCGGT--TCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAAT 194 ||| |||| ||| | ||| ||||| |||||||||| | ||| |||||||||||| Sbjct 15986 ATAAAATATGACTTT-GGTAGTCTATATTGTTGGTTTGCAC-ACCAAAGTAATGATTAAT 15929 Query 195 AGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAA 254 ||||| ||| |||||| | ||| | ||||||||||||| |||||||| | || Sbjct 15928 AGGGACAGTTGGGGGTATTCACATTTCAGCGTCAGAGGTGAAAATCTTGGATCGCTGAAA 15869 Query 255 GACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTA 314 || | || |||||||| || ||||||||||||||||||||||| |||||||||||| Sbjct 15868 GATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTA 15810 Query 315 GGGG 318 |||| Sbjct 15809 GGGG 15806 >seq863 Length=9128 Score = 178 bits (196), Expect = 2e-42 Identities = 199/250 (80%), Gaps = 12/250 (5%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| || |||||||| |||||||| |||| |||| | |||||||||||| Sbjct 3801 CTGTTACTTTGAAGAATTTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 3860 Query 131 GGAATAATAGAATAGGACGTG-CGGTTCTATTT-TGTTGGT-TTCTAGGACCGCCGTAAT 187 || ||| | |||||| | |||| ||| || |||||| ||| ||| || ||||| Sbjct 3861 GGG-TAACATCATAGGATTTTTCGGTCCTAATTCTGTTGGCCTTCAGGGATCGGAGTAAT 3919 Query 188 GATT-AATAGGGATAGTCGGGGGTGTCAGTATT-CAATTGTCAGAGGTGAAATTCTTGGA 245 |||| || ||||| |||||||| || ||||| |||| ||||||||||||||||||||| Sbjct 3920 GATTGAACAGGGACAGTCGGGGCATTC-GTATTTCAATAGTCAGAGGTGAAATTCTTGGA 3978 Query 246 TTTATTGAAGACTAACTACTGCGAAAG-CGTTCACCAAGG-ATGTTTTC-ATTAATCAGT 302 ||||| ||||| ||| || |||||| | || |||||| |||||||| |||||||| Sbjct 3979 TTTATGAAAGACGAACAACCTCGAAAGCCATTTGCCAAGGAATGTTTTCAATTAATCA-A 4037 Query 303 GAACGAAAGT 312 |||||||||| Sbjct 4038 GAACGAAAGT 4047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915180185920