Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq653 134 1e-29 seq1490 122 8e-26 >seq653 Length=1731 Score = 134 bits (148), Expect = 1e-29 Identities = 140/178 (79%), Gaps = 13/178 (7%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 |||| |||||||| ||||||| ||||||| ||||||||||||||||||||| |||| || Sbjct 735 ACGGGGGATGCCTTGGCTCTCAGAGGCGATGAAGGACGTGATAAGCTGCGATAAGCACCG 794 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGA-TATATTGG 124 ||||| ||| ||| ||||||||||| ||| ||||||||||| |||| | ||| ||| Sbjct 795 GGGATCAGCAAATATGAATTGATCCGGTGATTTCCGAATGGGGAAACCTAACTAT-TTGA 853 Query 125 AG-ATA-TATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || ||| | ||||| | || || ||| || ||||||||||||||||||| Sbjct 854 AGAATAGTTGCATAA----ATGC-----GCAAACCTGCTGAACTGAAACATCTAAGTA 902 >seq1490 Length=214893 Score = 122 bits (134), Expect = 8e-26 Identities = 96/114 (84%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | ||||||||||| ||| | |||||| ||||||||||||| ||||||||||| Sbjct 76792 GCATATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTGATAGCCTGCGAAAAGC 76851 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||||||| |||||| ||| ||||||||||||||||||||||||| ||||| Sbjct 76852 TACGGGGAGTTGGCAAATAAACTTTGATCCGTAGATATCCGAATGGGGAAACCC 76905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476789999865