Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq1490 560 3e-157 seq100 161 3e-37 seq81 82.4 2e-13 seq1346 78.8 2e-12 >seq1490 Length=214893 Score = 560 bits (620), Expect = 3e-157 Identities = 371/409 (91%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 75056 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 75115 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||||||||||||||||||||||||||||||||||||||| || ||| ||| ||| Sbjct 75116 GAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTTTGAAAGTCAGATGT 75175 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||||||| ||| ||| |||||| ||| |||| ||| || ||||||| | ||| Sbjct 75176 GAAATCCCCGAGCTCAACTTGGGAACTGCGTTTGAAACTCCAAAGCTAGAGTATAGGAGA 75235 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 ||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 75236 GGGGGGTAGAATTCCACGTGTAGCAGTGAAATGCGTAGAGATGTGGAGGAATACCAATGG 75295 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 75296 CGAAGGCAGCCCCCTGGCCTAATACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 75355 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG-GGATTTAC 361 ||||||||||||||||||||||||||||||||||| || |||||||||||| ||| | | Sbjct 75356 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCTACTAGTTGTTGGTGGAGTAAA 75415 Query 362 TTCC-TTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||| || |||||| |||||||||||||||| ||||||||||||| ||| Sbjct 75416 ATCCATTAGTAACGCAGCTAACGCGTGAAGTAGACCGCCTGGGGAGTAC 75464 >seq100 Length=112360 Score = 161 bits (178), Expect = 3e-37 Identities = 280/403 (69%), Gaps = 7/403 (2%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGT 60 ||| | || || ||| |||||||| ||| ||||||||||||||||||| || || | Sbjct 27746 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAAGACAGGGGAT 27688 Query 61 GCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGT 120 || || |||| |||||||| |||||||||||||| | ||| | | ||| | | Sbjct 27687 GCGAGTGTTATCCGGAATTATTGGGCGTAAAGCGTCTGTAGGTTGAATTCAAAGTCTTTT 27628 Query 121 GTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCA 180 || ||||| ||| ||| | || ||| | ||| || |||| || | Sbjct 27627 GTAAAATCTTTAAGCTCAACTTAAAAACCGCAAAAGATACTAGTTTTCTTGAGTATGGTA 27568 Query 181 GAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAAT 240 |||| |||||| | ||| ||| |||||||||||||| || | ||||||||||| Sbjct 27567 GAGGTAAAGGGAATTTCCAGTGGAGCGGTGAAATGCGTAGAGATTGGAAGGAACACCAAA 27508 Query 241 GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 300 ||||||||| ||||| | |||||| || | | |||||||| |||||||||| Sbjct 27507 AGCGAAGGCACTTTACTGGGCCATTACTGACACTGAGGGACGAAAGCTAAGGGAGCAAAC 27448 Query 301 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTA 360 ||||||||||||| ||||||| || ||||| || ||||| |||| | | || Sbjct 27447 GGGATTAGATACCCCGGTAGTCTTAGCAGTAAACCATGGATACTAGATGTT--GTAAATA 27390 Query 361 CTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGG 403 || | || ||||| |||||||| |||| ||||||||| Sbjct 27389 TTTAC--AGTGTCGTAGTTAACGCGTTAAGTATCCCGCCTGGG 27349 >seq81 Length=49885 Score = 82.4 bits (90), Expect = 2e-13 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 16 AGCACCGGCTAACTA-CGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 74 |||||||||||| | ||||||||| |||||||||||||| |||||||| |||| || Sbjct 45659 AGCACCGGCTAATTCTCGTGCCAGCCGCCGCGGTAATACGGGTGGTGCAAGTGTTATTCC 45600 Query 75 GAATTACTGGGCGTAAAGCGTG 96 | |||||||| |||||| ||| Sbjct 45599 TATTTACTGGGTGTAAAGGGTG 45578 >seq1346 Length=39314 Score = 78.8 bits (86), Expect = 2e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||||| ||||| |||| ||||| ||| ||||||||| ||||||||||| || ||| || Sbjct 5916 TACCTAAAGAAGAAGCTCCGGCCAACCTCGTGCCAGCCGCCGCGGTAATGCGGGGGGAGC 5975 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGT 95 ||||||| | || | ||||||||||| || Sbjct 5976 GAGCGTTATCCATCATGATTGGGCGTAAAGTGT 6008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289572080160