Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1490 134 2e-29 seq1467 107 3e-21 seq100 96.9 5e-18 >seq1490 Length=214893 Score = 134 bits (148), Expect = 2e-29 Identities = 181/248 (73%), Gaps = 7/248 (3%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| || |||| | || || ||| | || Sbjct 78608 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 78550 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||||| ||||||||||| || || ||| |||| ||| | | ||| || || Sbjct 78549 GTGTTTTTATTAAACAGTCGCAGCCACCTTTTCACTGCAACCTCATCGTGCTTCACGAGT 78490 Query 127 ----CGTT-CAC-CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || | ||| | | | ||| | ||||||||||||||||||| || | |||||||| Sbjct 78489 AAATCGCTACACACTACCGAGGCGCACCTTCTCCCGAAGTTACGGTGCTAATTTGCCGAG 78430 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| || |||| | | | |||||||| || ||| | | |||| |||||||| Sbjct 78429 TTCCTTCTCCCGGGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCGCACCAGTGTCGGT 78370 Query 241 TTACGGTA 248 || ||||| Sbjct 78369 TTGCGGTA 78362 >seq1467 Length=59618 Score = 107 bits (118), Expect = 3e-21 Identities = 168/242 (69%), Gaps = 19/242 (8%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 46491 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 46549 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || ||| || | | Sbjct 46550 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCT----------AATATTT 46599 Query 127 CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 | | || || || |||||||||||| | ||||||||||| |||||| Sbjct 46600 TTATTA--------GGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTT 46651 Query 187 AACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGG 246 | ||||||||| | | |||| || ||||| |||| |||||||||||||||| || Sbjct 46652 CAATACAGTTCACTCATTCACCTTGGTCTTCTCGACCTATTCACCTGTGTCGGTTTAGGG 46711 Query 247 TA 248 || Sbjct 46712 TA 46713 >seq100 Length=112360 Score = 96.9 bits (106), Expect = 5e-18 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||| | | |||| |||||||||| | || |||||||||| |||||||| | |||| | Sbjct 24744 GGCGCTCTTTCTTCCGAAGTTACAGAGCTATTTTGCCGAGTTCCTTAAGGAGGGTTCTCT 24803 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | |||||||||||||||| | |||||||||||||||| |||| Sbjct 24804 CGCGCTCCTTAGTATTCTCTACTTCCCCACCTGTGTCGGTTTCTGGTA 24851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694385436045