Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1490 459 7e-127 seq100 230 6e-58 seq1346 125 2e-26 seq2044 89.7 1e-15 seq1467 77.0 8e-12 >seq1490 Length=214893 Score = 459 bits (508), Expect = 7e-127 Identities = 357/419 (85%), Gaps = 15/419 (4%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || | |||||||||||| ||||||| ||| ||||||| || | |||||||| Sbjct 78798 CGCGGGTAGATTGCATCTTCACAAACATTTCAACTTCGCTGAGTCCCGAGAGGAGACAGT 78739 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 78738 GTGGCCATCGTTACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 78679 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| ||| |||||||||||||||| || Sbjct 78678 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGACTTCGATCAAGAGCTT-GC---- 78624 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 78623 ----ACCCCATCAATTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 78568 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 ||||||||||||||||||||||||||| |||||||||||||| ||| | || | ||| Sbjct 78567 TCGTGTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCTTTTCACTGCAACC 78508 Query 301 GGCAT-GAGCTTACGGAGCAAGTC-CTTCACCCTCACC--GGCGCACCTTCTCCCGAAGT 356 ||| | |||| ||| || || || ||| || ||| |||||||||||||||||||| Sbjct 78507 -TCATCGTGCTTCACGAGTAAATCGCTACACACT-ACCGAGGCGCACCTTCTCCCGAAGT 78450 Query 357 TACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 |||||||| |||||| ||||||||| |||| ||||||||||||||||| | || ||| Sbjct 78449 TACGGTGCTAATTTGCCGAGTTCCTTCTCCCGGGTTCTCTCAAGCGCCTTAGAATACTC 78391 >seq100 Length=112360 Score = 230 bits (254), Expect = 6e-58 Identities = 214/270 (79%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| ||||| ||||| | ||||| | | ||||||| | ||| || Sbjct 24449 GCATCTTCACAGACATTTCTATTTCGCCGAGTCCCTCCTTGAGACAGTTTCCAAATCATT 24508 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24509 ACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 24568 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGC---TAACCCC 189 | ||||||||||||||| ||||||||||| |||| |||||| | | | | || | Sbjct 24569 TAGTTACGGCCGCCGTTCACCGGGGCTTCAATCATAAGCTTC-AGAAAACTCTTGACTCA 24627 Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTG 249 | ||||||||||||||| |||||||||||| ||| ||||||| || | || | Sbjct 24628 CTTTTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACGTCGTTTTACAACTTAG 24687 Query 250 CAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 | ||| |||||||||| |||||||| || Sbjct 24688 CGGAGACCTGTGTTTTTGTTAAACAGTTGC 24717 >seq1346 Length=39314 Score = 125 bits (138), Expect = 2e-26 Identities = 167/230 (73%), Gaps = 9/230 (4%) Strand=Plus/Minus Query 53 GAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 112 ||||||| | || ||||||||| | || |||||| ||||| ||||||| ||||||||| Sbjct 3741 GAGACAGTGAAGCAGTCGTTACGCTACTCATGCAGGACGGAATTTACCCGCCAAGGAATT 3682 Query 113 TCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT 172 |||||||||||||||||| | ||||| |||||||||| | || | ||| | | Sbjct 3681 TCGCTACCTTAGGACCGTCAGAGTTACAGCCGCCGTTTGCTGGAG----GAT----AATT 3630 Query 173 TCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATAC 232 ||| || | || | || || | | |||||||||| |||||| | |||||| Sbjct 3629 TCGATGTA-TTTACATCTCCACATAGCTACTCAGCACCGGGCAAGCGTCAGTCTCTATAC 3571 Query 233 GTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGC 282 || || ||| || |||||| ||||||||| ||||||||||| || Sbjct 3570 ATCTTCTCTCGAATTCGCAGAGACTTGTGTTTTTGTTAAACAGTCGCCGC 3521 >seq2044 Length=314621 Score = 89.7 bits (98), Expect = 1e-15 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 8 ACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCA 67 || ||||||||||| | | ||| | ||| |||||||| ||||| ||||| | || Sbjct 117362 ACTCTGCATCTTCATGGATAATTCGAATTCCCTGAGTCTGTATTGGAGGCAGCGGGGACA 117421 Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 106 ||||| | |||||| |||||||||||||||||||||||| Sbjct 117422 TCGTTGCACCATTCATGCAGGTCGGAACTTACCCGACAA 117460 Score = 84.2 bits (92), Expect = 6e-14 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 8 ACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCA 67 || ||||||||||| | | ||| | ||| |||||||| ||||| ||||| | | Sbjct 126981 ACTCTGCATCTTCATGGATAATTCGAATTCCCTGAGTCTATATTGGAGGCAGCGGAGATA 127040 Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 106 ||||| | |||||| |||||||||||||||||||||||| Sbjct 127041 TCGTTGCACCATTCATGCAGGTCGGAACTTACCCGACAA 127079 >seq1467 Length=59618 Score = 77.0 bits (84), Expect = 8e-12 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 196 TAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGT 255 ||| ||||| |||||||||||| |||| ||||||||| || || | || ||||||| Sbjct 46487 TAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAGAGT 46546 Query 256 GCTGTGTTTTTAATAAACAGTCGCA 280 || ||||||| |||||||||||| Sbjct 46547 CCTAAGTTTTTATTAAACAGTCGCA 46571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260772703680