Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq100 282 9e-74 seq1490 215 1e-53 seq1346 201 2e-49 seq1467 100 6e-19 seq81 77.0 7e-12 >seq100 Length=112360 Score = 282 bits (312), Expect = 9e-74 Identities = 281/360 (78%), Gaps = 8/360 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | ||| | ||||| ||||||| | |||||||||| ||||||| || Sbjct 24449 GCATCTTCACAGACATTTCTATTTCGCCGAGTCCCTCCTTGAGACAGTTTCCAAATCATT 24508 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24509 ACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 24568 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTC-GATTGCTC-TAACAGAT 184 ||||||||||||||||| || ||||||| | | ||||| || ||| | || | Sbjct 24569 TAGTTACGGCCGCCGTTCACCGGGGCTTCAATCATAAGCTTCAGAAAACTCTTGACTCAC 24628 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 |||||||||| |||| |||||||||||||| || |||| |||| || | ||||||| Sbjct 24629 TTTTTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACGTCGTTTTACAACTTAGC 24688 Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGAC 304 || ||||||||||||| |||||||| |||||| || | | ||| || | Sbjct 24689 GGAGACCTGTGTTTTTGTTAAACAGTTGCTTGGAACTTGATATTTCAGCC---CA---AT 24742 Query 305 AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 ||| | | |||| || ||||||| | | ||||||||||||||||||| | |||||| Sbjct 24743 GGGCGCTCTTTCTTCCGAAGTTACAGAGCTATTTTGCCGAGTTCCTTAAGGAGGGTTCTC 24802 >seq1490 Length=214893 Score = 215 bits (238), Expect = 1e-53 Identities = 210/267 (79%), Gaps = 9/267 (3%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| ||| ||| ||| | ||||| | ||||||||| |||||| Sbjct 78786 GCATCTTCACAAACATTTCAACTTCGCTGAGTCCCGAGAGGAGACAGTGTGGCCATCGTT 78727 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 78726 ACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 78667 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||||||||||||||||||||| ||| | ||| | |||| | | || | Sbjct 78666 TAGTTACGGCCGCCGTTTACTGGGACTT-CGATCA----AGAGCTTGC---ACCCCAT-C 78616 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||||||||||||||||||| ||||||| || ||| || || |||| Sbjct 78615 AATTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 78556 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGC 273 | |||||||||| ||||||||||| Sbjct 78555 AGTGCTGTGTTTTTATTAAACAGTCGC 78529 >seq1346 Length=39314 Score = 201 bits (222), Expect = 2e-49 Identities = 270/374 (72%), Gaps = 20/374 (5%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 || || |||||||||| || ||| ||| |||| | | ||| ||||||||| | Sbjct 3787 TAACCCGCATCTTCACGGGTATTTCAAATTCATCAAAAATATATGCGAGACAGTGAAGCA 3728 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||||| || ||| || ||||| ||||||| ||||||||||||||||||||||| Sbjct 3727 GTCGTTACGCTACTCATGCAGGACGGAATTTACCCGCCAAGGAATTTCGCTACCTTAGGA 3668 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||| | |||||| |||||||||| |||| | ||| ||||| || | || Sbjct 3667 CCGTCAGAGTTACAGCCGCCGTTTGCTGGAGGATAA--------TTTCGA-TGTATTTAC 3617 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | ||| | || | |||||||||||| ||||||| ||||||||| ||| ||| | Sbjct 3616 ATCTCCACATAGCTACTCAGCACCGGGCAAGCGTCAGTCTCTATACATCTTCTCTCGAAT 3557 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----T 295 | ||||| || |||||||||| ||||||||||| ||| ||| ||| | | Sbjct 3556 TCGCAGAGACTTGTGTTTTTGTTAAACAGTCGCCGCTTCCTCTTCAATGCTAACTCTATT 3497 Query 296 GTCAT-AGACA-----GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCC 349 || || | ||| | ||| ||||||||| ||||||| | |||| ||||| ||||||| Sbjct 3496 GTAATAAAACAATAGCGTCACTCCTTCTCCCGAAGTTACAGAGTCAATTTGCAGAGTTCC 3437 Query 350 TTAACAATAGTTCT 363 ||| |||||||| Sbjct 3436 TTACATATAGTTCT 3423 >seq1467 Length=59618 Score = 100 bits (110), Expect = 6e-19 Identities = 128/176 (73%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 190 TAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAA 249 ||| |||||||||||||||||| ||||| |||||||||| | || | | |||||||| Sbjct 46487 TAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAGAGT 46546 Query 250 CCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC---TGTCATAGACAG 306 ||| |||||| ||||||||||| |||||| | || || | | | || Sbjct 46547 CCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTAATATTTTTATTAG 46606 Query 307 GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTC 362 | || || |||| ||||||| |||||||||||||||||||| | | ||||| Sbjct 46607 GTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAATACAGTTC 46662 >seq81 Length=49885 Score = 77.0 bits (84), Expect = 7e-12 Identities = 120/171 (70%), Gaps = 18/171 (11%) Strand=Plus/Plus Query 198 CAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA-GCAGAAACCTGTGT 256 ||||||||| |||| ||||| | | |||||| | || | | ||| |||||| ||||||| Sbjct 42493 CAGCACCGGACAGGTGTCAGATTCAATACATTCTTTTACAATTTATGCAGAATCCTGTGT 42552 Query 257 TTTTGGTAAACAGTCGCTTGGGCCT----------AT------TCTCTGCGGCCTGTCAT 300 |||||||||||||| |||| ||| || | | | | || || Sbjct 42553 TTTTGGTAAACAGTTGCTTCTTCCTGCTCTGTTACATTATTTATATTTACTTACTACTAT 42612 Query 301 AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTT 351 | | | || ||||||||| |||||||| |||||||||||||||||||| Sbjct 42613 AAATA-ATACTCCTTCTCCCGAAGTTACGAAGTCATTTTGCCGAGTTCCTT 42662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062376999040