Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1490 471 1e-130 seq100 354 2e-95 seq1346 154 4e-35 seq81 116 1e-23 seq1581 75.2 3e-11 >seq1490 Length=214893 Score = 471 bits (522), Expect = 1e-130 Identities = 407/500 (81%), Gaps = 7/500 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || ||||||||| |||||||||||| ||||||||||||||||| || Sbjct 75462 TACGGTCGCAAGATTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGATTAT 75521 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT-CCTCTGACCCCT 119 |||| ||||||||| |||||||||| ||||||||| |||||||| || || || Sbjct 75522 GTGGATTAATTCGATGCAACGCGAAAAACCTTACCTGGCCTTGACATGCCACTAACGAAG 75581 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTG---ACAGGTGATGCATGGTTGTCG 176 | |||||| | || ||| || | |||| ||||||| ||||||| ||||| Sbjct 75582 C-AGAGATGCA--TTAGGTGCTCGAAAGAGAAAGTGGACACAGGTGCTGCATGGCTGTCG 75638 Query 177 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAG 236 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 75639 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCGTTAA 75698 Query 237 TTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGG 296 ||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 75699 TTGCCATCATTTAGTTGGGCACTTTAACGAGACTGCCGGTGACAAACCGGAGGAAGGTGG 75758 Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 ||| |||||||| || ||||| |||||||| ||||| ||||||| |||||||| | Sbjct 75759 GGATGACGTCAAGTCCTCATGGCCCTTATGGCCAGGGCTTCACACGTAATACAATGGTCG 75818 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 |||| |||| || || |||||||| ||| ||||||| |||| | || ||| ||| Sbjct 75819 GTACAGAGGGTTGCCAACCCGCGAGGGGGAGCCAATCCCAGAAAGCCGATCGTAGTCCGG 75878 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATG 476 |||| |||||||||||||||| |||||| ||||||||||||||||| |||||||||| Sbjct 75879 ATTGCAGTCTGCAACTCGACTGCATGAAGTCGGAATCGCTAGTAATCGCGGATCAGCATG 75938 Query 477 CTACGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 75939 TCGCGGTGAATACGTTCCCG 75958 >seq100 Length=112360 Score = 354 bits (392), Expect = 2e-95 Identities = 371/486 (76%), Gaps = 21/486 (4%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 27339 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTT 27280 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| ||||||||||||||| ||||||| || | | || | Sbjct 27279 TAATTCGATGCAACACGAAGAACCTTACCAGGGATTGACATGAAGAGAAGTGTTTTGAAA 27220 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 | | | | | | || | | ||||||| ||||||| ||||||||||||||| Sbjct 27219 GAAATGCGTGC---TACGGCCTCTTAC--ACAGGTGGTGCATGGCTGTCGTCAGCTCGTG 27165 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCAT 246 |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 27164 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTTTTTAGTT-------- 27113 Query 247 TAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTC 306 || || ||||| |||||||| | | | | |||||||||||| ||| |||||| Sbjct 27112 -AATTT------TCTAAAAAGACTGCCGATTATACATCGGAGGAAGGTGAGGATGACGTC 27060 Query 307 AAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGG 366 || |||||||||| |||| | ||||||||||||||||||||||||| | ||||| | Sbjct 27059 AAGTCATCATGCCTCTTACGCCCTGGGCTACACACGTGCTACAATGGATATAACAAAAAG 27000 Query 367 CAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCT 426 || | | | | ||| |||| |||| | | || ||||| |||||||| || Sbjct 26999 TTGCCAGTTTGTAAAAACGAGCTAATCTT-TAAATATATCCTTAGTTCAGATTGTAGACT 26941 Query 427 GCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAA 486 | |||||| ||| |||||| |||||||||||||||||| ||| ||||||||| ||||||| Sbjct 26940 GAAACTCGTCTACATGAAGGTGGAATCGCTAGTAATCGCAGAACAGCATGCTGCGGTGAA 26881 Query 487 TACGTT 492 || ||| Sbjct 26880 TATGTT 26875 >seq1346 Length=39314 Score = 154 bits (170), Expect = 4e-35 Identities = 358/529 (68%), Gaps = 52/529 (10%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||| ||| ||| |||||||||||||||||||||| | ||||| ||||||| || Sbjct 6325 TACGATGTCAACATTGGAACTCAAAGGAATTGACGGGGAGTCATACAAGTGGTGGAGTAT 6384 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||| || ||||||| |||||| || | | || Sbjct 6385 GTGGTTTAATTCGATAACACGCGCGAAATCTTACCAGTTCTTGA-ATATTTTT---CCAA 6440 Query 121 TAGAGATA-GAG-GTTTCCCCTTCGG---GGGA-----------------CAGAG--TGA 156 | | ||| ||| || | | || | | || |||| | | Sbjct 6441 AACAAATACGAGAGTATTCTGTTGGTTAAGTGAATCAAGACATTCATAAACAGAAATTTA 6500 Query 157 CAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACG 216 |||||| ||||||| ||||||||||||||||||||||||||| |||| ||||| |||| Sbjct 6501 CAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTTCAGTCCAAAAACG 6560 Query 217 AGCGCAACCC----TTAAGCTTAGTTGCCA---------TCATTAAGTTGGGCAC-TCTA 262 |||| ||| | || | || || | | || |||| ||| ||| | || Sbjct 6561 AGCGAAACTCTTGTTTTATATTGGTAGTGATTTAGGGTCTCTTTAA-TTGCCCACTTATA 6619 Query 263 AGTTGACTGCCGGTGACAAAC--CGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCC 320 | | ||||||| || || |||||||||| | | |||| ||||| | | ||| || Sbjct 6620 AAAT-ACTGCCG--TACTTACGTCGGAGGAAGGAGAGAACGATGTCAAGCCTTTATGGCC 6676 Query 321 CTTATGATTTGGGCTACACACGTGCTACAATGG--ACAATACAAAGGGCAGCGAAACCGC 378 |||||| |||||||||||| | ||||||||| | | | |||| || ||| | Sbjct 6677 TTTATGAACTGGGCTACACACATACTACAATGGTAATCACAAAAAGTCTTGCAAAAGAGT 6736 Query 379 GAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTA 438 | | ||| |||| ||| ||| | || ||| |||| ||| |||||||||| ||| Sbjct 6737 AATCTTGAGCTAATCTTTAAAAATTG-CCACA-TTCCGATTATAGGCTGCAACTCGCCTA 6794 Query 439 TATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAAT 487 |||||||| |||||| | |||||||| | || || | | | ||||||| Sbjct 6795 TATGAAGCCGGAATCACAAGTAATCGCAAATTAGTACGTTGTGGTGAAT 6843 >seq81 Length=49885 Score = 116 bits (128), Expect = 1e-23 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 284 CGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGT 343 ||||||||| | |||| ||||||||||||| | | || |||| |||||||||||| || Sbjct 44928 CGGAGGAAGTTTGGGAGGACGTCAAATCATTACGGCCTTTATAGATTGGGCTACACATGT 44869 Query 344 GCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTT 403 |||||||||| |||||||| | | | | | | || || | | ||| || Sbjct 44868 GCTACAATGGTAAATACAAAAAGACACATGAATGTAAATTATAGTGAAACTTAAAAAATT 44809 Query 404 GTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAA---GCTGGAATCGCTAGTA 460 ||| |||||||||| | ||| |||||| | ||||| | |||||||||||||| Sbjct 44808 -ATCTAAGTTCGGATTATTTCCTGAAACTCGGAAACATGAATTGGATGGAATCGCTAGTA 44750 Query 461 ATCGTAGATCAGCATGCTACGGTGAATACGTTCCC 495 ||| ||||| || ||||| ||||||| ||| ||| Sbjct 44749 ATCATAGATAAGTTTGCTATGGTGAATTCGTACCC 44715 Score = 80.6 bits (88), Expect = 8e-13 Identities = 84/109 (77%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGC-ACAAGCGGTGGAGCA 59 || || |||||| ||||||| |||| || |||||| ||| | ||||||||||||||| Sbjct 45285 TATGATCGCAAGATTGAAACCTAAAGAAACTGACGGAGACTAGTTACAAGCGGTGGAGCA 45226 Query 60 TGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATC 108 |||||||||||| || | ||| | || ||||||| | ||| |||| Sbjct 45225 TGTGGTTTAATTTGATAAATCGCAAGAAATCTTACCAGTTTTTGTCATC 45177 >seq1581 Length=167781 Score = 75.2 bits (82), Expect = 3e-11 Identities = 63/76 (83%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 288 GGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGA-TTTGGGCTACACACGTGCT 346 |||||||||||| |||||||| || ||||| ||||| | | || | ||||||||| |||| Sbjct 40020 GGAAGGTGGGGATGACGTCAAGTCTTCATGGCCCTTGTAAGTTCGCGCTACACACATGCT 40079 Query 347 ACAATGGACAATACAA 362 ||||||| | ||||| Sbjct 40080 ACAATGGTAACTACAA 40095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503967438400