Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1571 304 2e-80 seq1732 302 7e-80 seq151 297 3e-78 seq1731 269 4e-70 seq1767 251 1e-64 seq863 178 2e-42 seq453 178 2e-42 seq390 154 2e-35 seq87 152 8e-35 seq1327 122 1e-25 seq323 82.4 1e-13 seq1679 73.4 6e-11 >seq1571 Length=97646 Score = 304 bits (336), Expect = 2e-80 Identities = 218/250 (87%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15308 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 15367 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC-----AGCCACCAACC 128 ||||||| |||| | || | |||| ||||||||||||||| | | | ||||| Sbjct 15368 CAACTTCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCACAAACCTACCAAAA 15427 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || || || |||||||||| | |||| |||||||||| |||||||||||||||| Sbjct 15428 ATGGTAAGCGGAACTATTTAGCACGCGGAGGTTTCGTTCGTTAACGGAATTAACCAGACA 15487 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15488 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTC 15547 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 15548 TCAATCTGTC 15557 >seq1732 Length=9078 Score = 302 bits (334), Expect = 7e-80 Identities = 218/249 (88%), Gaps = 11/249 (4%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8685 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 8744 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG--CCACC----AACCA 129 ||||||| | |||| | || ||||||||||||||||| || ||| |||| Sbjct 8745 GAACTTCCGTCGGCTACACACCGATAGTCCCTCTAAGAAGTCACGTCCAAAGGAGAACCT 8804 Query 130 TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | ||||| ||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 8805 TTGTCGAA----CTATTTAGCAGGTCGAGGTCTCGTTCGTTAACGGAATTAACCAGACAA 8860 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | Sbjct 8861 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGATCT-T 8919 Query 250 CAATCTGTC 258 ||||||||| Sbjct 8920 CAATCTGTC 8928 >seq151 Length=6618 Score = 297 bits (328), Expect = 3e-78 Identities = 225/262 (86%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 5873 ACTCGTTGTCTCTGTCAGTGTAGCGCGCGTGCAGCCCGGAACATCTAAGGGCATCACAGA 5814 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCA-- 118 ||||||||||||| | ||||| || || | | ||||||||||||||||| || Sbjct 5813 CCTGTTATTGCCTTTTGCCTCCATCACCTAGACGGTCGATAGTCCCTCTAAGAAGACATA 5754 Query 119 -GCCACCAACCATA-GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGA 176 | ||||| | | ||| | | ||||||||||||| ||||||||||||||||||||| Sbjct 5753 AGGGGCCAACAAAATGTCAACCCGTCTATTTAGCAGGTCAAGGTCTCGTTCGTTATCGGA 5694 Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5693 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATC 5634 Query 237 AAGAAAGAGCTATCAATCTGTC 258 | ||||| || ||||||||||| Sbjct 5633 ATGAAAGCGCCATCAATCTGTC 5612 >seq1731 Length=8278 Score = 269 bits (298), Expect = 4e-70 Identities = 217/260 (83%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 3127 ACTCGCTGCGTGTGTCAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGA 3068 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||| | ||||||| | | | || | ||||||||||||||| || Sbjct 3067 CCTGTTATTGCCCCCAACTTCCTTCGATTAATCACCGAAAGTCCCTCTAAGAAGTACACC 3008 Query 122 ACCAACCATAGTCGATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | | ||| | | ||| || |||||||| |||||||||||||| |||||| Sbjct 3007 TCAATGC-TAGGCATTAAGGCGACTAGTTAGCAGGCGGGGGTCTCGTTCGTTAACGGAAT 2949 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2948 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 2889 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||| Sbjct 2888 GAAAGAGCTCTCAATCTGTC 2869 >seq1767 Length=130814 Score = 251 bits (278), Expect = 1e-64 Identities = 203/243 (84%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 23 AGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 82 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 12017 AGTGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTC 11958 Query 83 CATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCC-----AGCCACCAACCATAGTCG 135 | | || | || | |||| ||| ||||||||||| | | | ||||| || || Sbjct 11957 CTTCGGTTTGATTACCCAA-AGTTCCTCTAAGAAGTCCACAAACCTACCAAAAATGGTAA 11899 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 | |||||||||| | ||||||||||||||| ||||||||||| ||||||||||| Sbjct 11898 GCAGAACTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCGGACAAATCACT 11839 Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||||||||||||||||||||||||||| || |||||||||||| ||||||| ||||| | Sbjct 11838 CCACCAACTAAGAACGGCCATGCACCACAACTCATAGAATCAAGGAAGAGCTCTCAATTT 11779 Query 256 GTC 258 ||| Sbjct 11778 GTC 11776 Score = 147 bits (162), Expect = 3e-33 Identities = 188/254 (74%), Gaps = 14/254 (6%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTA-AGGGCATCACAGACCTGTTATTGCCT 74 ||||||||| ||||||| ||||||| | ||||| ||| | |||||||| |||||||||| Sbjct 56202 TCAGTGTAGTGCGCGTGTGGCCCAGGATATCTATAGGACGTCACAGACTTGTTATTGCCC 56143 Query 75 CAAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAG-CCAGCCACCAACCATA 131 | || || |||| | | | ||||||||||||| | |||| ||| ||| |||| | Sbjct 56142 CCAAATTTTTTTGGTTTAACTACCCAATAGTCCCTCAAGGAAGTCCACAAACCTACCAAA 56083 Query 132 GTCGATGGG--GCTA-----TTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 |||| || | ||| || | |||||||||| |||| || | |||| Sbjct 56082 A---ATGGTAAGCAAAATCATTTGGCTCGCGGAGGTCTCGTTTGTTACCGAGAGACACCA 56026 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGA 244 ||||||||||| ||||| | ||| |||||||||||||| ||||| |||| ||||||| Sbjct 56025 GACAAATCACTTTACCAATTCAGAGCGGCCATGCACCACAACCCAAAGAAATTAGAAAGA 55966 Query 245 GCTATCAATCTGTC 258 ||| ||||| |||| Sbjct 55965 GCTCTCAATTTGTC 55952 >seq863 Length=9128 Score = 178 bits (196), Expect = 2e-42 Identities = 203/254 (80%), Gaps = 18/254 (7%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCAC-AGACCTGTTATTGCCTC 75 |||| |||| |||||||| ||||||||||||||||||||||| ||||| |||||||||| Sbjct 4553 CAGT-TAGC-CGCGTGCG-CCCAGAACATCTAAGGGCATCACCAGACCCTTTATTGCCTC 4497 Query 76 AAACTTCCATTGGCTG-GAAGCCAATAGTCCCTCTA--AGAAGCCAGCCACCAAC---CA 129 |||||||| | | || | |||| |||||||||| |||||| || | | || Sbjct 4496 AAACTTCCTTGGCCTAAGCGGCCATGAGTCCCTCTACGAGAAGCTGGCTGCGGAGGCTCA 4437 Query 130 TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT-AACCAGACA 188 || | |||| |||||||| | || |||||||||||| ||||||| ||||||||| Sbjct 4436 CCTTC-ACATAGCTAGTTAGCAGGCTGAG-TCTCGTTCGTTAACGGAATTAAACCAGACA 4379 Query 189 AATCACTCCACCAA-CTAAGAACGGCCATGC-ACCACCA-CCCATAGA-ATCAAGAAAGA 244 || | ||||||||| ||||||||||||| || ||||||| |||||||| ||| ||||||| Sbjct 4378 AACCGCTCCACCAATCTAAGAACGGCCAGGCAACCACCACCCCATAGACATC-AGAAAGA 4320 Query 245 GCTATCAATCTGTC 258 ||| ||| |||||| Sbjct 4319 GCTCTCAGTCTGTC 4306 >seq453 Length=12031 Score = 178 bits (196), Expect = 2e-42 Identities = 111/118 (94%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| ||| | | |||||||||||||||||||||||||||||||||||||||||| Sbjct 2404 CTATTTAGTAGGATGCGATCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 2463 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAG-AATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 2464 ACTAAGAACGGCCATGCACCACCACCCATAGAAATTAAGAAAGAGCTATCAATCTGTC 2521 Score = 113 bits (124), Expect = 7e-23 Identities = 85/99 (86%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| ||| || |||||||||||||||||||||||||||||||| | Sbjct 2204 CAGTGTAGCGCGCGTGCAGCCTAGGACATCTAAGGGCATCACAGACCTGTTATTGCCGC- 2262 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 |||||| | |||| ||| | ||||||||||||||| Sbjct 2263 -ACTTCCTTCGGCTAATCGCCGACAGTCCCTCTAAGAAG 2300 >seq390 Length=374559 Score = 154 bits (170), Expect = 2e-35 Identities = 184/245 (75%), Gaps = 10/245 (4%) Strand=Plus/Plus Query 23 AGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT- 81 |||||| |||| | ||||||||| ||||||||||| ||| |||||||||||| || || Sbjct 83053 AGCGCGAGTGCCGTCCAGAACATTTAAGGGCATCATAGATTTGTTATTGCCTCCAAGTTA 83112 Query 82 CCATTGGCTG-GAAGCCAATAGTCCCTCTAAGAAG----CCAGCCACCAACCATAGTCGA 136 ||| ||| | |||| ||||| |||||||| | | || || || || Sbjct 83113 TTTTTGTCTGATTACCCAAATGTCCCGCTAAGAAGTCCACAATCCTGTAAAAATGGTAAG 83172 Query 137 TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTC 196 || | ||||||||| | |||||||||||||||| | ||| ||||||| | | ||| Sbjct 83173 CGGAGTTATTTAGCACGCGAAGGTCTCGTTCGTTAAC-GAAAGCACCAGACTATTGACTT 83231 Query 197 CACCAACTAAGAACGGCCATG---CACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||| ||| |||| |||||||||||||| |||||||||| |||| ||| Sbjct 83232 CACCAACTAAGAGCGGTCATGCACCACCACCACCCATACAATCAAGAAAAAGCTCATAAT 83291 Query 254 CTGTC 258 ||||| Sbjct 83292 CTGTC 83296 >seq87 Length=14717 Score = 152 bits (168), Expect = 8e-35 Identities = 104/117 (89%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||| ||||||||||||||||||||| | |||||||| |||||||||||||||| | Sbjct 3467 CTAGTTAGTAGGTTAAGGTCTCGTTCGTTAACTGAATTAACAAGACAAATCACTCCACGA 3408 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| |||||||||||| || |||| ||||| Sbjct 3407 ACTAAGAACGGCCATGCACCACCATCCAGAGAATCAAGAAAAGACTTTCAACCTGTC 3351 Score = 95.1 bits (104), Expect = 2e-17 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| | Sbjct 3675 CAGTGTAGTACGCGTGCTGCCCAGGGCATCTAAGGGCATCACAGACCTGTTATTGCCTTA 3616 Query 77 AACTTCC 83 ||||||| Sbjct 3615 AACTTCC 3609 >seq1327 Length=71880 Score = 122 bits (134), Expect = 1e-25 Identities = 178/244 (73%), Gaps = 16/244 (7%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||| |||||||| |||| |||||||| | ||||| || |||||||| || Sbjct 37605 TCAGTGTAGCGTGCGTGCGGTCCAGGACATCTAAACG--TCACAAACTTGTTATTGTTTC 37548 Query 76 AAACTTCCATTGGCTGGAAG--CCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 || ||||| | | || |||| |||||||| || | ||| || |||| | Sbjct 37547 AA-CTTCCTTAATTTTGACTTCCCAAAAGTCCCTCGAAAATTCCAAAATCCTACCAGCGA 37489 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA--GACAAAT 191 || ||||||||| | || |||||||||| ||| || || ||| | | ||||| Sbjct 37488 A-AT-----TATTTAGCACGCTA-GGTCTCGTTCCTTAACG--ATAAACAACGGGCAAAT 37438 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | ||||||| ||| |||||||||||||||||||||||| ||||||||||| || Sbjct 37437 CTTTCCACCATTAAAGTACGGCCATGCACCACCACCCATAGGGATAAGAAAGAGCTCCCA 37378 Query 252 ATCT 255 |||| Sbjct 37377 ATCT 37374 >seq323 Length=150695 Score = 82.4 bits (90), Expect = 1e-13 Identities = 71/90 (79%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCA--T 216 |||||| |||||| || ||||||| ||||||||||||||||||| | Sbjct 136493 GTCTCGCTCGTTAACGAAATTAAC-AGACAAATCACTCCACCAANNNNNNNNNNNNNNNT 136435 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGC 246 |||||||||||||||||||||||||||||| Sbjct 136434 GCACCACCACCCATAGAATCAAGAAAGAGC 136405 >seq1679 Length=190720 Score = 73.4 bits (80), Expect = 6e-11 Identities = 79/102 (77%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 ||| || ||| | ||| |||| || |||||| |||||| |||| ||| ||||| | Sbjct 61883 AGGGCTTGTTTGCTATTTAAATTGACTAGACAAGTCACTCAACCATTTAA-AACGGTAAA 61941 Query 217 GCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||| || | |||||||| Sbjct 61942 -CACCACCACCCATAGAATCAAGAAATAGTTTATAATCTGTC 61982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796783288365