Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30]
2,165 sequences; 101,296,116 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq1490 183 6e-44
seq100 163 6e-38
>seq1490
Length=214893
Score = 183 bits (202), Expect = 6e-44
Identities = 169/214 (79%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185
|||||||||||||||||||||| ||||||||||||||||||||| | | ||| || |||
Sbjct 78987 GGGCAGTTTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGAGTGCGAAGGTAACCT 79046
Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245
| || ||||| | | | | ||||||| |||| |||| || |||||||||| ||
Sbjct 79047 AGGTACGGTCGGAAATCGTACTGATAGTGCAATGGCATAAGGTTGCTTGACTGCGAGACG 79106
Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305
|| ||| |||||| |||||| || | || |||||||| ||| ||| |||||| |||
Sbjct 79107 GACAGGTCGAGCAGGTGCGAAAGCAGGTCATAGTGATCCGGTGGTTCTGTATGGAAGGGC 79166
Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| |||||| ||||||||||| ||| |||||||||
Sbjct 79167 CATCGCTCAACGGATAAAAGGTACTCTGGGGATA 79200
>seq100
Length=112360
Score = 163 bits (180), Expect = 6e-38
Identities = 173/227 (76%), Gaps = 1/227 (0%)
Strand=Plus/Minus
Query 114 aCAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCC 173
||||| |||| |||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 24259 ACAGTTTCAGGTGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGTA 24200
Query 174 CAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTT 233
||||| | ||||| | ||| |||| | | || ||||||| |||||| | ||
Sbjct 24199 CAAAGGTTTCCTCAAATCAGATAGAAATTGATTGAAGAGCGCAAAGGTAAAAGGAAGCTT 24140
Query 234 GACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG-GTGC 292
|||| || || |||||| | ||| |||||||||||| |||| ||||| | || | |
Sbjct 24139 AACTGTGAGACAAACAAGTCAAACAGAGACGAAAGTCGGTCTTAGTGATCTGACGTTTTC 24080
Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| ||||| || |||| ||| ||||||||||| ||| || ||||||
Sbjct 24079 TGTGTGGAAAGGACGTCACTCAACGGATAAAAGTTACTCTAGGGATA 24033
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982378731040
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |