Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq1490 118 1e-24 seq100 118 1e-24 seq1346 78.8 1e-12 >seq1490 Length=214893 Score = 118 bits (130), Expect = 1e-24 Identities = 116/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| |||||||| |||||||||| | | | ||| ||| |||| Sbjct 78816 GGGGTCTTTCCGTCTAGCCGCGGGTAGATTGCATCTTCACAAACATTTCAACTTCGCTGA 78757 Query 84 GCTCACG-GTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || || | ||||||| ||| |||||||||| ||||||||||||||| Sbjct 78756 G-TCCCGAGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCGGGTCGGAACTTACCC 78698 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 78697 GACAAGGAATTTCGCTACCTTAGGACCGTTA 78667 >seq100 Length=112360 Score = 118 bits (130), Expect = 1e-24 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 ||||||| |||| ||| |||| || |||||||||| || | | | ||||| | ||| Sbjct 24420 GGGTCTTACTGTCCTGGCGCAGGTAGTCCGCATCTTCACAGACATTTCTATTTCGCCGAG 24479 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | ||||||||| ||| |||||||||| ||||||||||||||||| Sbjct 24480 TCCCTCCTTGAGACAGTTTCCAAATCATTACGCCATTCGTGCGGGTCGGAACTTACCCGA 24539 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 24540 CAAGGAATTTCGCTACCTTAGGACCGTTA 24568 >seq1346 Length=39314 Score = 78.8 bits (86), Expect = 1e-12 Identities = 103/147 (70%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| |||| |||| | |||||||||| | || | ||| |||| | Sbjct 3810 GGGTCTTTCCGTCTAATCGTAAGTAACCCGCATCTTCACGGGTATTTCAAATTCATCAAA 3751 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | ||||||| ||| | | || |||||| ||||| ||||||| Sbjct 3750 AATATATGCGAGACAGTGAAGCAGTCGTTACGCTACTCATGCAGGACGGAATTTACCCGC 3691 Query 145 CAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||||||||||| Sbjct 3690 CAAGGAATTTCGCTACCTTAGGACCGT 3664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547188523335