Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1490 266 7e-69 seq100 232 1e-58 seq1346 150 4e-34 seq81 75.2 2e-11 >seq1490 Length=214893 Score = 266 bits (294), Expect = 7e-69 Identities = 240/297 (81%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| ||| |||||||||||| |||||||||| || | ||| Sbjct 75003 CTTTACAACCCGAAGGCCTTCTT-CACTCACGCGGCATTG-CTGGATCAGGGTTGCCCCC 74946 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 74945 ATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 74886 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| || |||||||||||||| ||| |||||| |||||||| || ||||| || Sbjct 74885 TGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTTGCCTTGGTAGGCTTTTACCCCA 74826 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| || | ||| || ||| ||| | | ||||| ||| Sbjct 74825 CCAACTAGCTAATCAGATATCGGCCGCTCCAGGAGCATGAGGTCTTGCGATCCCCCACTT 74766 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGC--GTCCGTTTCCGAACGTTATCCCCCACT 295 || |||||| |||||||||||||||| ||| |||| ||||||||||||| Sbjct 74765 TCATCCGTAGATCGTATGCGGTATTAGCTAGTC--TTTCGACTAGTTATCCCCCACT 74711 >seq100 Length=112360 Score = 232 bits (256), Expect = 1e-58 Identities = 171/198 (86%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| | | | | || |||| ||| ||| |||| |||||||| |||||||| | Sbjct 27774 CTTTACAACCTAATTAGCCTCCATCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTC 27832 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 27833 ATTGTCCAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 27892 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||| | ||| ||| ||||||||||||||| |||| || ||| | Sbjct 27893 TGTGGCTGATCATCCTCTCAAATCAGCTACTGATCGTCGCCTTGGTAAGCCTTTCCCTTA 27952 Query 181 CCAACTAGCTAATCCGAC 198 |||||||||||||| ||| Sbjct 27953 CCAACTAGCTAATCAGAC 27970 >seq1346 Length=39314 Score = 150 bits (166), Expect = 4e-34 Identities = 138/175 (79%), Gaps = 7/175 (4%) Strand=Plus/Minus Query 42 CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTG 101 |||||||| |||||||| |||||||||||||||||||||||| | |||||| Sbjct 5822 CTGGATCAAGCTTTCGCTGATTGTCCAATATTCCCCACTGCTGACAT-------AGTCTG 5770 Query 102 GACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCC 161 |||| | ||||||||||| |||| |||||| | | | | ||||| || |||||| | | Sbjct 5769 GACCTTATCTCAGTTCCAATGTGGCTGATCGTTCGCCAAAACCAGCTAAGGATCGCAGGC 5710 Query 162 TTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGC 216 |||||||||| ||||| ||||||| | ||||||| | ||||||||||| | ||| Sbjct 5709 TTGGTGAGCCTTTACCCCACCAACCACCTAATCCTGCATAGGCTCATCTCACAGC 5655 >seq81 Length=49885 Score = 75.2 bits (82), Expect = 2e-11 Identities = 102/137 (74%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 53 TTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTC 112 ||| | | |||| ||| |||||| ||||||||||| | | | ||| |||||| |||| Sbjct 45748 TTTAGTCTATTGCCCACTATTCCACACTGCTGCCTTCAATCGAAGTTGAGACCGT-TCTC 45806 Query 113 AGTTCCAGTGTGACTGATCATCCTCTCAGA-CCAGTTACGGATCGTC-GCCTTGGTGAGC 170 | ||| |||| ||| ||||||||||||| ||| | | || ||| | |||||| || Sbjct 45807 AATTCTCATGTGGCTGTTCATCCTCTCAGATTCAGCAAAGCAT-GTCTGGCTTGGTATGC 45865 Query 171 CATTACCTCACCAACTA 187 ||||| ||||||||| Sbjct 45866 TTTTACCACACCAACTA 45882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071976791200