Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq1439 116 5e-24 seq1505 80.6 4e-13 >seq1439 Length=156656 Score = 116 bits (128), Expect = 5e-24 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 57 GCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCG 116 ||| || ||||||||||| || | | ||||||||| || || |||| |||||| ||||| Sbjct 128869 GCCGGGCGCCGGCGCTTCCTCGATGATCTTCTGGTGGCGGCGCTGCATCGAGCAGTCGCG 128928 Query 117 GTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 |||||||| || ||| | |||||||||| ||| || || | ||||||||||| Sbjct 128929 CTCGCCCAGCCAGACGGCATTCTTGTGGCCGTCGGCCAGCACCTGGATCTCCACGTGACG 128988 Query 177 TGGGTTGGTCAGGTACTTTTCCAGGTAGACCATCGGGTTGCCGAACCAGGCGCCCGCTTC 236 || | |||| |||| |||| ||||||| ||| |||||||| ||| |||| || Sbjct 128989 CGGATGCTCCAGGAACTTCTCCATGTAGACCTGCGGATTGCCGAAGGCCGCGGCCGCCTC 129048 Query 237 GG 238 || Sbjct 129049 GG 129050 >seq1505 Length=366367 Score = 80.6 bits (88), Expect = 4e-13 Identities = 85/112 (76%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 65 CCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCA 124 ||||| |||| || | | |||||||||||||||||||| ||||| ||||| ||| || Sbjct 187072 CCGGCCCTTCCTCGACAATCTTCTGGTGACGACGTTGCACGGAGCAGTCGCGCCCGCTCA 187131 Query 125 GGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACG 176 | ||||||| ||| | || |||| || | ||||||||||| ||| || Sbjct 187132 GCGCAATGGCGTTGCCGTAGCTATCGGCCAAGAGTTGCACTTCCAAGTGCCG 187183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735984563550