Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1490 376 9e-102 seq100 197 5e-48 seq653 132 2e-28 seq1346 78.8 3e-12 seq81 78.8 3e-12 seq1731 75.2 4e-11 >seq1490 Length=214893 Score = 376 bits (416), Expect = 9e-102 Identities = 423/551 (77%), Gaps = 25/551 (5%) Strand=Plus/Minus Query 45 CACTTCCCGGCATTCGGAGTTTGGT-TGATTTCGGTAAG--CTTGTGGGCCCCCTAGACC 101 |||||| | | |||||||||||| || ||| |||||| ||| || |||||||| || Sbjct 77698 CACTTCTCAGTATTCGGAGTTTGCAATGGTTT-GGTAAGTTCTTATGAACCCCCTAG-CC 77641 Query 102 ATC-CAGTGCTCTACCTCCGGGAA-GAAACACGCGACGCTGCACCTAAATGCATTTCGGG 159 || |||||||||||| || || || ||| | | || |||||||| |||||| Sbjct 77640 ATAACAGTGCTCTACCCCCAAGAGTGATTTACGAGGCACT--ACCTAAATAGTTTTCGGA 77583 Query 160 GAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTC 219 ||||||||||||| | ||||||| || ||||||||||||||||||||| |||||||| Sbjct 77582 GAGAACCAGCTATTTCCAAGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCAA 77523 Query 220 AGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCC 279 | |||||||| | |||||||||| |||||| ||| |||||| ||||| |||| || Sbjct 77522 ATTTTTCAACATTTGTGGGTTCGGACCTCCAGTTGGTGTTACCCAACCTTCATCCTGGCC 77463 Query 280 ATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTC 339 ||||||||||||||| | ||||||||| | | || ||| || |||||||||||||||| Sbjct 77462 ATGGATAGATCACTTGGTTTCGGGTCTACACCCAGCAACT-AT-CGCCCTATTCGGACTC 77405 Query 340 GCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCT 399 |||||||||||| || ||| | |||||| || || || || | || |||| | | Sbjct 77404 GCTTTCGCTACGCCT--CCCCTATCGGTTAAGCTTGCTACTGAATG-TAAGTCGCTGACC 77348 Query 400 CATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATT 459 |||| | ||||||| |||| ||||| || || ||| || ||||| || | || Sbjct 77347 CATTATACAAAAGGTACGCAGTCAC--GGAAC----AAG-----TCCGCTCCCACTGTTT 77299 Query 460 GTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCC 519 ||| ||| | ||||||||| |||||||||||||| || ||||| |||||| |||||||| Sbjct 77298 GTATGCATACGGTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCC 77239 Query 520 TCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGC 579 ||||||||||||| ||||||||||| | |||||||||| ||| || ||||||| | Sbjct 77238 TCACGGTACTTGTTCGCTATCGGTCGATTACGAGTATTTAGCCTTGGAGGATGGTCCCCC 77179 Query 580 CAGATTCACAC 590 || |||| || Sbjct 77178 CATGTTCAGAC 77168 >seq100 Length=112360 Score = 197 bits (218), Expect = 5e-48 Identities = 309/434 (71%), Gaps = 16/434 (4%) Strand=Plus/Plus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||||||| ||| ||||||||||||||||||||| | | || ||||||| ||||| Sbjct 25681 CGCTGCACCTCAATACATTTCGGGGAGAACCAGCTAGCTCCGCTTTCGATTGGCATTTCA 25740 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||||| |||||| || | |||||||| | ||| ||||||| ||||| | | Sbjct 25741 CCCCTAACCACACCTCATCCGCTAATTTTTCAACATTAGTCGGTTCGGGCCTCCCCTTAG 25800 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGA--TCGT 313 | | ||| | |||| |||| ||||| ||||||| | ||||||||| | | || Sbjct 25801 TGTCACCTAAGTTTCACCCTGGACATGGTTAGATCAAGCGGGTTCGGGTCTATAATTAGT 25860 Query 314 GCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCA-CACGGGTTAACC 372 | ||| | ||| |||||| ||||||||| ||| |||| | | | | || | | Sbjct 25861 G--ACT--TTCGCTCTATTCAAGCTCGCTTTCACTATGGCTCCAATATCTCTATTTTAAC 25916 Query 373 TCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACC 432 ||| || ||| ||||||| || |||||||||| ||||||| | | | ||| Sbjct 25917 CCGCCAC-TAACTATAACTCGCCGGAACATTCTTCAACAGGCACGAAG--AAATACTACT 25973 Query 433 TAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCC 492 |||| | || | | | | ||||| || ||||| || || ||||| ||| Sbjct 25974 AAAAAAG-----GAGTTTCTTCTGTTTGTAAGCTTGCAATTTCACGTTCTTTTTCAATCC 26028 Query 493 CCGCCAGGGGTAC-TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGG 551 || || ||||| | |||||||| ||||||||||||||| | ||||||||| | | ||| Sbjct 26029 CCTCCCGGGGTTCTTTTTCACCATTCCCTCACGGTACTATTTCGCTATCGGATATCTAGG 26088 Query 552 AGTATTTAGGCTTA 565 | ||||||| |||| Sbjct 26089 AATATTTAGTCTTA 26102 >seq653 Length=1731 Score = 132 bits (146), Expect = 2e-28 Identities = 294/410 (72%), Gaps = 42/410 (10%) Strand=Plus/Plus Query 143 CCTAAATGCATTTCGGGGAGAACCAGC--TATCACGAAGTTTGATTG-GCCTTTCACC-C 198 |||||| |||||||||||| || ||| ||| | | |||||||| |||||||||| | Sbjct 1327 CCTAAAAACATTTCGGGGAGTACGAGCCTTATTCCCA-GTTTGATTTAGCCTTTCACCTC 1385 Query 199 CTATCC-ACAGGTCATCCCCTCAGTTTTCAACC--TAAGTGGGTTCGGTCCTCCACGCGG 255 ||| || |||| |||||| | |||||||| | | |||||| ||||||| | | Sbjct 1386 CTACCCCACAGATCATCCGGAAACTTTTCAACGGTTTTATCGGTTCG-TCCTCCAACCTG 1444 Query 256 TCTTACCCGCGC-TTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTG 314 | ||| || | ||||||||| |||||| |||||||| | |||| |||| | | Sbjct 1445 T--TACGGGCACCTTCAACCTGTCCATGGGTAGATCACAAGGTTTCGCGTCTACCCCCTT 1502 Query 315 CC-ACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCAC---ACGGGTTAA 370 | ||| || |||||||||| | ||||||||||| ||||| | | || |||| Sbjct 1503 CTTACT-AT-CGCCCTATTCCAA-TCGCTTTCGCTTCGGCTGCGTGGCTTAACCACTTAA 1559 Query 371 CCTCGCGACACA-ACGCA--AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTG 427 ||| | | || | | ||| |||||| ||||||||| | ||||||||| |||||||| | Sbjct 1560 CCTTG-GCCAGAGAGGCAGTAACTCGTAGGCTCATTATGCAAAAGGCA-GCCGTCACA-G 1616 Query 428 GTACCTAAAAGGCACTTCAGCTCCGAC-GGATTG-TAGGCACAT-GGTTTCAGG-TACTA 483 | || ||| || |||||||| || ||| || | ||| ||||||||| | ||| Sbjct 1617 GAAC----AAG-----TCTGCTCCGACCGGCTTGATAAGTACACCGGTTTCAGGGTTCTA 1667 Query 484 TT-TCACTCCCCGCCA---GGGGTACTTTTCACCTTTCCCTCACGGTACT 529 || ||||| ||| ||||| |||||||||||||| ||||||||| Sbjct 1668 TTGTCACTTCCCCTGTTTCGGGGTTCTTTTCACCTTTCCTCCACGGTACT 1717 >seq1346 Length=39314 Score = 78.8 bits (86), Expect = 3e-12 Identities = 117/166 (70%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 || ||||| |||||| || | ||||||||| | | |||||| |||||||||||||| Sbjct 2737 ACTTAAATATATTTCGCAGAAATCCAGCTATCCCTGAATTTGATAAGCCTTTCACCCCTA 2678 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTAC 261 | ||| ||||||| | ||| |||| | | |||||| ||| || |||| ||| Sbjct 2677 ACTACAAATCATCCCAAGATTTTGCAACATCCACGAGTTCGGCCCTTCAAACGGTTTTAA 2618 Query 262 CCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTT 307 | |||| |||| ||| | ||| ||| | ||||||||| || Sbjct 2617 GCATTTTTCAGCCTGTTCATAGTTAGCTCATTCAGCTTCGGGTTTT 2572 >seq81 Length=49885 Score = 78.8 bits (86), Expect = 3e-12 Identities = 63/75 (84%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 |||| ||| |||||| || |||||||||| | ||||||||||||||||||||||||| Sbjct 43403 ACCTGAATAGATTTCGCAGAAAACCAGCTATTCC-AAGTTTGATTGGCCTTTCACCCCTA 43461 Query 202 TCCACAGGTCATCCC 216 | |||| ||||||| Sbjct 43462 TTCACAATTCATCCC 43476 >seq1731 Length=8278 Score = 75.2 bits (82), Expect = 4e-11 Identities = 70/89 (79%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 472 TTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTG 531 |||||||||||||||||||| | || ||||||| ||||||||||||||||||| Sbjct 4566 TTTCAGGTACTATTTCACTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTG 4507 Query 532 TCCGCTATCGGTCACCAAGGAGTATTTAG 560 | |||||||||| || | ||||||| Sbjct 4506 TTTGCTATCGGTCTCCTATCCATATTTAG 4478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817560648960