Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1490 450 3e-124 seq100 147 5e-33 seq653 100 7e-19 >seq1490 Length=214893 Score = 450 bits (498), Expect = 3e-124 Identities = 358/415 (86%), Gaps = 13/415 (3%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || || ||||||||| | || ||||||| ||||||||| | Sbjct 77544 CCTATCCACAGCTCATCCCC--AAATTTTTCAACATTTGTGGGTTCGGACCTCCAGTTGG 77487 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||||||||||| || |||| |||| ||||||||| | ||||| |||||||| | Sbjct 77486 T-GTTACCCAACCTT-CATCCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 77432 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||| |||| ||||||| | |||||||||| ||||||||||||||||| |||||||| Sbjct 77431 CCAGCAACTAT-CGCCCTATTCGGACTCGCTTT-CGCTACGCCTCCCCTAT-CGGTTAAG 77375 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| || |||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 77374 CTT-GCTACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACGGAACAA 77316 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 || |||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| Sbjct 77315 -GTCCGCTCCCACTGTTTGTATGCATACGGTTTCAGGATCTATTTCACTCCCCTC-CCGG 77258 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||| ||||||||| | | ||||||||| Sbjct 77257 GGTTCTTTTCGCCTTTCCCTCACGGTACTTGTTCGCTATCGGTCGATTACGAGTATTTAG 77198 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||| |||||||| ||||||||||| ||| |||||| Sbjct 77197 CCTTGGAGGATGGTCCCCCCATGTTCAGACAGGGTTTCTCGTGCCCCGCCCTACT 77143 >seq100 Length=112360 Score = 147 bits (162), Expect = 5e-33 Identities = 297/421 (71%), Gaps = 25/421 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||||| ||||||||| |||||||||||| ||||| ||||| || Sbjct 25748 CCACACCTCAT-CCGCTAA-TTTTTCAACATTAGTCGGTTCGGGCCTCCCCTTAGT-GTC 25804 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTAT--TTCCCA 126 ||| || ||||| |||| ||| || |||||| ||| || ||||||||| || | Sbjct 25805 ACCTAAG-TTTCACCCTGGACAT-GGTTAGATCAAGCGGGTT-CGGGTCTATAATT---A 25858 Query 127 GCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTAT---TCGGTTAAG 183 | |||| ||| ||| | | |||||||| | ||| | |||| ||| | |||| Sbjct 25859 GTGACTTT-CGCTCTATTCAAGCTCGCTTT-CACTATGGCTCCAATATCTCTATTTTAAC 25916 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAAC-- 241 | |||||| | |||| |||| | |||| | ||| ||| ||| || | | || Sbjct 25917 CC--GCCACTAACTATAACTCGCCGGAACATTCTTCAACAGGCACGAAGAAATACTACTA 25974 Query 242 -AAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 ||| | | | | ||| ||||| || | | ||||| | ||| ||||| ||||||| | Sbjct 25975 AAAAAGGAGTTTCTTCTGTTTGTAAGCTTGCAATTTCACGTTCTTTTTCAATCCCCTC-C 26033 Query 301 CGGGGTTCTTTT-CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359 |||||||||||| | || |||||||||||||||| ||| ||||||| | || | ||| Sbjct 26034 CGGGGTTCTTTTTCACCATTCCCTCACGGTACTATTTCGCTATCGGATATCTAGGAATAT 26093 Query 360 TTAGCCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||| ||| || | ||||| | | |||| || | || |||||| ||| | ||||| Sbjct 26094 TTAGTCTTACGAAG-TGGTCTTCGTAACTTCATACGGAATTCCTCGTGTTCCATACTACT 26152 Query 419 C 419 | Sbjct 26153 C 26153 >seq653 Length=1731 Score = 100 bits (110), Expect = 7e-19 Identities = 249/351 (71%), Gaps = 29/351 (8%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGT--CGGTTCGGTCCTCCAGTTAGTAG 66 |||||| |||| ||| ||||||| ||||||| | ||||||| ||||||| | | Sbjct 1391 CCACAGATCAT-CCGGAAACTTTT-CAACGGTTTTATCGGTTCG-TCCTCCA---ACCTG 1444 Query 67 TTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCA 126 |||| | ||||||||| |||| || |||||| | ||||| || ||||| || Sbjct 1445 TTACGGGCACCTTCAACCTGTCCATGGG-TAGATCACAAGGTTT-CGCGTCTACCCCCTT 1502 Query 127 GCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC----CCTATTCGGTTAA 182 |||| ||||||| | | ||||||| |||| || || | | || | |||| Sbjct 1503 CTTACTAT-CGCCCTATTCCAA-TCGCTTT-CGCTTCGGCTGCGTGGCTTAACCACTTAA 1559 Query 183 GCTTTGCCACTGAA--AATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAA 240 ||| |||| || | ||| ||| | | |||||| ||||||| | || ||||| | Sbjct 1560 CCTTGGCCAGAGAGGCAGTAACTCGTAGGCTCATTATGCAAAAGGCA-GCCGTCACAGGA 1618 Query 241 CAAAGTGGGCTCCCACTG-CTTG-TACGCATAC-GGTTTCAGGAT-CTATT-TCACT-CC 294 |||| ||||| || | |||| || | | || ||||||||| | ||||| ||||| || Sbjct 1619 ACAAGTCTGCTCCGACCGGCTTGATAAGTACACCGGTTTCAGGGTTCTATTGTCACTTCC 1678 Query 295 CCTCTC-CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCG 344 ||| | ||||||||||||| ||||||| ||||||||| |||||| |||| Sbjct 1679 CCTGTTTCGGGGTTCTTTTCACCTTTCCTCCACGGTACT-GTTCAC-ATCG 1727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241573119360