Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq151 104 1e-20 seq1732 91.5 9e-17 seq1571 82.4 5e-14 seq1767 71.6 8e-11 >seq151 Length=6618 Score = 104 bits (114), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 |||| |||||||||||||| || ||||||||| ||||||||||| ||||||||||||||| Sbjct 6063 AAGTCCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAG 6006 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||| | ||||||||||| Sbjct 6005 GGACGTAGT-CAACGCAAGCT 5986 >seq1732 Length=9078 Score = 91.5 bits (100), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 8486 CTCACTAATCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 8543 Query 109 TAATACAACGCAAG 122 |||| ||| ||||| Sbjct 8544 TAAT-CAATGCAAG 8556 >seq1571 Length=97646 Score = 82.4 bits (90), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 3/81 (4%) Strand=Plus/Plus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 || || |||| || |||| || ||||||| ||||||||||| ||||||||||||||| Sbjct 15104 AATTTTTCACCGAGTCATT-CAATCGGTAGGT-GCGACGGGCGGTGTGTACAAAGGGCAG 15161 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||||| ||||||||||| Sbjct 15162 GGACGTAAT-CAACGCAAGCT 15181 >seq1767 Length=130814 Score = 71.6 bits (78), Expect = 8e-11 Identities = 59/68 (87%), Gaps = 3/68 (4%) Strand=Plus/Minus Query 56 AGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACA 115 || ||||| || |||||| ||||||||||| |||||||||||||||| ||||||| || Sbjct 12211 AGTCATTTAAT-CGGTAGGT-GCGACGGGCGGTGTGTACAAAGGGCAGGAACGTAAT-CA 12155 Query 116 ACGCAAGC 123 |||||||| Sbjct 12154 ACGCAAGC 12147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300793894700