Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1490 190 4e-46 seq100 156 8e-36 seq1346 86.0 1e-14 >seq1490 Length=214893 Score = 190 bits (210), Expect = 4e-46 Identities = 138/160 (86%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||||||| |||||||||| ||| || ||||||||||||||||||||| Sbjct 74971 GGCATTGCTGGATCAGGGTTGCCCCCATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAG 74912 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | || |||||||| || ||||| ||| Sbjct 74911 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCTACTGAT 74852 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||| | |||||| |||| ||| | ||||||||| |||||| Sbjct 74851 CGTTGCCTTGGTAGGCTTTTACCCCACCAACTAGCTAATC 74812 >seq100 Length=112360 Score = 156 bits (172), Expect = 8e-36 Identities = 133/164 (81%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||| | |||| | |||||| ||| || || |||||||||||||||||||||||| Sbjct 27813 GCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCT 27872 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || |||||||||||| ||| |||||| | ||| ||||||| | ||||| |||||||| Sbjct 27873 GGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAAATCAGCTACTGATCGTCGC 27932 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGC 170 |||||| || || || |||||||| |||||| | ||||||| Sbjct 27933 CTTGGTAAGCCTTTCCCTTACCAACTAGCTAATCAGACGCGAGC 27976 >seq1346 Length=39314 Score = 86.0 bits (94), Expect = 1e-14 Identities = 132/189 (70%), Gaps = 7/189 (4%) Strand=Plus/Minus Query 5 TCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGT 64 || ||| |||| | |||| | ||||| |||||| ||||||||||| | ||| Sbjct 5825 TCACTGGATCAAGCTTTCGCTGATTGTCCAATATTCCCCACTGCTGAC-------ATAGT 5773 Query 65 CTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTC 124 |||| || | ||||||| |||||||||| | || | | | || |||| ||||| Sbjct 5772 CTGGACCTTATCTCAGTTCCAATGTGGCTGATCGTTCGCCAAAACCAGCTAAGGATCGCA 5713 Query 125 GGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGA 184 ||||||||| || ||| | ||||||| |||||||| | || ||||| |||| | Sbjct 5712 GGCTTGGTGAGCCTTTACCCCACCAACCACCTAATCCTGCATAGGCTCATCTCACAGCAA 5653 Query 185 TAAATCTTT 193 | ||| ||| Sbjct 5652 TTAATTTTT 5644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998378384640