Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq1834 217 3e-54 seq1415 87.8 4e-15 >seq1834 Length=181004 Score = 217 bits (240), Expect = 3e-54 Identities = 294/403 (73%), Gaps = 15/403 (4%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||||||||||| ||||||||||| | ||||||||||| || ||||| ||||| | Sbjct 60828 CGATGGTCAGCAGATCGCCGCCCACTTCCGTCCACGCCAGACCGACCACCTGGCCGACCT 60769 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 | | || || ||| || ||||| || | | ||||||||||| ||||| | | ||| Sbjct 60768 GGTTCTTCTTCTCCGCGCGGCCGAAGTCGTACTTGCGCACGCCCAGGAACTCGTTGAGGT 60709 Query 121 AGTCGGCCGTGACC------TTCACCGAGAAGCGTTTTTCCAGC-GCATGTTCCTTGACC 173 ||| | |||||| || || |||| || || ||| ||| | |||||||| Sbjct 60708 TGTCCTCGGTGACCACGACCTTGCCCTCGAAG-GTCTTG--AGCTGCAGGC-CCTTGACC 60653 Query 174 GCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTG 233 |||||||||||||||| | || || ||||||||| ||||| |||||||| |||||| Sbjct 60652 ACCTTGCGGCAGATCTTGGAGACCTCGCGCTCCAGCGACCGCACGCCGGCTTCCCGGGTG 60593 Query 234 TAGTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGG 293 |||||||||| | | | ||||||| ||| | | ||||| ||| | | ||||| | Sbjct 60592 TAGTAGCGGATCACGCCACGGATCGCGCCCTCGGTGACTTCGAGCTCCTCATCCTTCACG 60533 Query 294 CCATTG--GCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGT 351 || ||| ||| |||||||||| ||||| ||||||||||| |||||| | Sbjct 60532 CCGTTGTTGCC--CCGCTGCTTGGGCAGCAGGTAGCGCTGGGCGATGTTGACCTTCTCAT 60475 Query 352 CTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 | ||||||||||||| ||| || || || |||||||||||||| Sbjct 60474 CCTCGGTGTAACCCGACAGACGGATGACCTCCATCCGGTCCAG 60432 >seq1415 Length=39952 Score = 87.8 bits (96), Expect = 4e-15 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 163 GTTCCTTGACCGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGG 222 ||||||||||| |||||||||| || || | ||| | || ||||| | ||||||||||| Sbjct 6798 GTTCCTTGACCACCTTGCGGCAAATTTTTGAGATTTCACGGTCCAGACTACGCACACCGG 6739 Query 223 CTTCGCGGGTGTAGTAGCGGACGATGTCGCG 253 |||| || ||||| ||||| || ||||| || Sbjct 6738 CTTCACGCGTGTAATAGCGCACAATGTCACG 6708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158374920640