Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq1490 168 2e-39 seq100 167 5e-39 >seq1490 Length=214893 Score = 168 bits (186), Expect = 2e-39 Identities = 288/403 (71%), Gaps = 16/403 (4%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||| ||||||| ||||||||||| | || || ||| | | | | Sbjct 78135 CTACGCATCTCTGCCTCACCTTAGGGGCCGACTCACCCTGCGCCGATGAACGTTGCGCAG 78076 Query 64 GAACCCTTGGATAATCGGCGGACGGGA----TTCCCACCCGTCACACGCTACTCATGCCT 119 ||| |||||| |||||| |||| ||| | ||| | | ||||||||||| | Sbjct 78075 GAAACCTTGGGCTTTCGGCGA--GGGAGCTTTTCACTCCCTTTAT-CGCTACTCATGTCA 78019 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | || | ||||| || | |||| || |||| | | ||| Sbjct 78018 GCATTCGCACTTCTGAT-ACCTCCAGCATTCC-TCACAGAACACCTTCGCAGGCCTACAG 77961 Query 178 GACGCTCCCCTACCCAACCACACAG-GTTGCCACAGCTTCGGCGGATAACTTAAGCCCCG 236 |||||| |||||| | ||| | | || ||||||||| |||| |||||| Sbjct 77960 AACGCTCTCCTACC-ATGCACTATGTGCATCCGCAGCTTCGGTTACGTGCTTA-GCCCCG 77903 Query 237 CTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGG 296 ||||| || |||| | | ||| ||| ||||||||||||||| ||||| |||||||| Sbjct 77902 TTACATCTTCCGCGCAGGACGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGATGG 77843 Query 297 CTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCA 356 ||||||| ||||||||||||| | |||||| || |||| || ||| ||||| || || Sbjct 77842 CTGCTTCTAAGCCAACCTCCTAGCTGTCTATGCCTTCCCACTTCGTTTTCCACTTAG-CA 77784 Query 357 CCAC-TTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | | || ||| ||||||||| | |||||| ||||||||||| Sbjct 77783 CGTCATTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 77741 >seq100 Length=112360 Score = 167 bits (184), Expect = 5e-39 Identities = 152/191 (80%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 208 CACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAG 267 |||||||||||| || ||||| ||| | ||| ||||||| || || |||||| Sbjct 25360 CACAGCTTCGGCAAATTACTTAGTCCCAA--AAATTTTCGGCGCAAAACTGCTAGACCAG 25417 Query 268 TGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTAC 327 | |||||||||||||| ||| |||||| |||||||| |||| |||||||||||||| | Sbjct 25418 TAAGCTATTACGCACTTTTTAAAGGATTGCTGCTTCTAAGCGAACCTCCTGGTTGTTTTA 25477 Query 328 GCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGC 387 || | ||| |||||| |||| ||| | || |||||||||||| ||| |||||||||| Sbjct 25478 GCCTTTTCACTTCCTTTTTCACTTAGTAATCATTTAGGGGCCTTAACTGGTGATCTGGGC 25537 Query 388 TGTTTCCCTCT 398 ||||||||||| Sbjct 25538 TGTTTCCCTCT 25548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177574504960