Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1490 232 6e-59 seq1581 73.4 3e-11 seq100 73.4 3e-11 >seq1490 Length=214893 Score = 232 bits (256), Expect = 6e-59 Identities = 148/161 (92%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||| Sbjct 75897 TCGAGTTGCAGACTGCAATCCGGACTACGATCGGCTTTCTGGGATTGGCTCCCCCTCGCG 75838 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||||||| ||||||||| |||||||||| |||||||||||||| |||||||||||| Sbjct 75837 GGTTGGCAACCCTCTGTACCGACCATTGTATTACGTGTGAAGCCCTGGCCATAAGGGCCA 75778 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||||||||||||||||||||||||||| Sbjct 75777 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 75737 >seq1581 Length=167781 Score = 73.4 bits (80), Expect = 3e-11 Identities = 62/75 (83%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 75 TGTATGTACCATTGTATGACGTGTGAAGCCCTACCC-ATAAGGGCCATGAGGACTTGACG 133 |||| |||||||||| | ||||| ||| | | | | ||||||||||| ||||||||| Sbjct 40094 TGTAGTTACCATTGTAGCATGTGTGTAGCGCGAACTTACAAGGGCCATGAAGACTTGACG 40035 Query 134 TCATCCCCACCTTCC 148 ||||||||||||||| Sbjct 40034 TCATCCCCACCTTCC 40020 >seq100 Length=112360 Score = 73.4 bits (80), Expect = 3e-11 Identities = 58/70 (83%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| ||||| | |||| | ||||| ||||||||||||||| || Sbjct 27013 CCATTGTAGCACGTGTGTAGCCCAGGGCGTAAGAGGCATGATGACTTGACGTCATCCTCA 27072 Query 143 CCTTCCTCCG 152 |||||||||| Sbjct 27073 CCTTCCTCCG 27082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415991275050