Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq1490 208 1e-51 seq100 154 2e-35 seq81 80.6 4e-13 >seq1490 Length=214893 Score = 208 bits (230), Expect = 1e-51 Identities = 220/290 (76%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | ||||||||| | |||| | |||||||||| |||| | Sbjct 75345 CCCACGCTTTCGTGCATGAGCGTCAGTATTAGGCCAGGGGGCTGCCTTCGCCATTGGTAT 75286 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| || |||||||||||||| ||||||| ||||||| ||||||| || Sbjct 75285 TCCTCCACATCTCTACGCATTTCACTGCTACACGTGGAATTCTACCCCCCTCTCCTATAC 75226 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || ||||||||| |||| ||||||| | | |||||||||||||| Sbjct 75225 TCTAGCTTTGGAGTTTCAAACGCAGTTCCCAAGTTGAGCTCGGGGATTTCACATCTGACT 75166 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||| | | | |||||| |||| ||| |||| ||||||| || |||||| Sbjct 75165 TTCAAAACCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTCGCACCCTACG 75106 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 75105 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGTA 75056 >seq100 Length=112360 Score = 154 bits (170), Expect = 2e-35 Identities = 197/269 (73%), Gaps = 3/269 (1%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| |||||| |||||| | | |||| || |||||||| |||||||||| Sbjct 27461 GCTTTCGTCCCTCAGTGTCAGTAATGGCCCAGTAAAGTGCCTTCGCTTTTGGTGTTCCTT 27520 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| || ||||| | ||||||| Sbjct 27521 CCAATCTCTACGCATTTCACCGCTCCACTGGAAATTCCCTTTACCTCTACCATACTCAAG 27580 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||| ||| || ||| | | | ||||||| | || ||| ||| ||||| Sbjct 27581 AAAACTAGTATCTTTTGCGGTTTTTAAGTTGAGCTTAAAGATTTTACAAAAGACTTTGAA 27640 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 | | |||||| | |||||| |||||||| |||||||||| || || || || ||| Sbjct 27641 TTCAACCTACAGACGCTTTACGCCCAATAATTCCGGATAACACTCGCATCCCCTGTCTTA 27700 Query 246 CCGCGGCTGCTGGCAC--GTAGTTAGCCG 272 |||||||||||||||| ||| ||||||| Sbjct 27701 CCGCGGCTGCTGGCACGGGTA-TTAGCCG 27728 >seq81 Length=49885 Score = 80.6 bits (88), Expect = 4e-13 Identities = 70/84 (83%), Gaps = 5/84 (6%) Strand=Plus/Plus Query 192 CTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTG--CCACCTACGTATTACCGC 249 |||||| ||||||||||||| ||||| | ||||| |||| ||||| ||||||||||| Sbjct 45573 CTACACACCCTTTACACCCAGTAAATAGGAATAACACTTGCACCACC--CGTATTACCGC 45630 Query 250 GGCTGCTGGCACG-TAGTTAGCCG 272 ||| ||||||||| | ||||||| Sbjct 45631 GGCGGCTGGCACGAGAATTAGCCG 45654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828782617215