Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq151 201 1e-49 seq1732 185 9e-45 seq1731 147 2e-33 seq863 105 7e-21 seq1571 100 3e-19 >seq151 Length=6618 Score = 201 bits (222), Expect = 1e-49 Identities = 159/188 (85%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTG-CTCGAAT 59 |||||||||||| |||||||||||||||||||| |||||||||||||| | | | ||||| Sbjct 5108 GGAACCAGGACTATTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCATAGGCCCGAAT 5167 Query 60 ACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCG 119 | |||| |||||||||| ||||||||||||||||||||||||||| ||||||||| || | Sbjct 5168 ATATTAGCATGGAATAACAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGAACTG 5227 Query 120 CCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATT 179 |||||||||| || | ||| || |||||| | |||||| | | |||||||||| Sbjct 5228 -CCGTAATGATTAAAAGGGACAGCCGGGGGCATTAGTATTTGCACGCTAGAGGTGAAATT 5286 Query 180 CTTGGATT 187 |||||||| Sbjct 5287 CTTGGATT 5294 >seq1732 Length=9078 Score = 185 bits (204), Expect = 9e-45 Identities = 150/178 (84%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCT-CGAATACATTACCAT 69 ||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||| ||| Sbjct 427 CTTTTACTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTTTGCTATGAATACATTAGCAT 368 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 ||||||||| |||||| | |||||||||||||| |||||||||||| | ||||||| Sbjct 367 GGAATAATAATTTAGGAC-TTCGGTTCTATTTTGTTGGTTTCTAGGACTG-AAGTAATGA 310 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 | ||| ||||||| ||||||| |||||||| | || |||||||||||| ||||| Sbjct 309 TTGATAGGGATAGTTGGGGGTGCTAGTATTCAGCGGCCAGAGGTGAAATTCTCGGATT 252 >seq1731 Length=8278 Score = 147 bits (162), Expect = 2e-33 Identities = 144/180 (80%), Gaps = 7/180 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC--TCGAATACATTACCATG 70 |||||| ||| ||| ||||| ||||||||||||| | || | |||||||||| |||| Sbjct 2384 TTTACTGTGAGCAAAATAGAGTGTTCAAAGCAGGCTTACGCCGTTGAATACATTAGCATG 2443 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 |||||||| ||||||| | | |||||||||| |||| || ||| |||||||| Sbjct 2444 GAATAATAAGATAGGACCTTGG--TCTATTTTGTTGGTTA-TACT-CCGAG-GTAATGAT 2498 Query 131 AAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 |||| ||| ||| |||||| | |||||||||||||| ||||||||||||||||||||| Sbjct 2499 TAATAGGGACAGTTGGGGGTATTCGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 2558 >seq863 Length=9128 Score = 105 bits (116), Expect = 7e-21 Identities = 142/186 (76%), Gaps = 9/186 (5%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| || |||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 3801 CTGTTACTTTGAAGAATTTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 3860 Query 70 GGAATAATAGAATAGGACGTG-CGGTTCTATTT-TGTAGGT-TTCTAGGACCGCCCGTAA 126 || ||| | |||||| | |||| ||| || ||| || ||| ||| || |||| Sbjct 3861 GGG-TAACATCATAGGATTTTTCGGTCCTAATTCTGTTGGCCTTCAGGGATCGGA-GTAA 3918 Query 127 TGATA-AATACGGATAGTCGGGGGTGTCAGTATT-CAATTGTCAAAGGTGAAATTCTTGG 184 |||| || | ||| |||||||| || ||||| |||| |||| ||||||||||||||| Sbjct 3919 TGATTGAACAGGGACAGTCGGGGCATTC-GTATTTCAATAGTCAGAGGTGAAATTCTTGG 3977 Query 185 ATTTAT 190 |||||| Sbjct 3978 ATTTAT 3983 >seq1571 Length=97646 Score = 100 bits (110), Expect = 3e-19 Identities = 129/173 (75%), Gaps = 9/173 (5%) Strand=Plus/Minus Query 20 TGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----GAATACATTACCATGGAATA 75 || ||||||||||| ||| |||||||| || |||| |||||||||| |||| |||| Sbjct 16046 TGTAAAAATTAGAGTGTTTGAAGCAGGCGTTAGCTCATTTGAATACATTAGCATGAAATA 15987 Query 76 ATAGAATAGGACGTGCGGT--TCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAA 133 ||| |||| ||| | ||| ||||| |||| ||||| | ||| |||||||| || Sbjct 15986 ATAAAATATGAC-TTTGGTAGTCTATATTGTTGGTTTGCA-CACC-AAAGTAATGATTAA 15930 Query 134 TACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 || ||| ||| |||||| | ||| | |||| |||||||| |||||||| Sbjct 15929 TAGGGACAGTTGGGGGTATTCACATTTCAGCGTCAGAGGTGAAAATCTTGGAT 15877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511989261600