Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq100 255 9e-66 seq1346 172 9e-41 seq81 118 2e-24 seq2034 95.1 2e-17 seq1834 91.5 2e-16 >seq100 Length=112360 Score = 255 bits (282), Expect = 9e-66 Identities = 225/277 (81%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 ||||| ||||| ||||||||| |||||| ||||| ||| || ||||| ||||| Sbjct 23707 GAGGACAGCTTCCCACTTAGATGCTTTCAGCGGTTATCTAAACCATACATAGCTACCCAG 23766 Query 62 CTATGCACTT--GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGT 119 | ||| |||| || | ||||||| ||| || ||| |||| || |||||||||||| Sbjct 23767 C-ATGTACTTCTGGTGAAATAACTGGTACACTAGCGGTATGTCTTTCTCGGTCCTCTCGT 23825 Query 120 ACTAAGGACAGCTC-CTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCT 178 |||| || || | ||||||| ||| |||||||| |||||| |||||||||||||| Sbjct 23826 ACTAGAGAAAGGCCACTCTCAATACTCCATCGCCCACGCCGGATATGGACCGAACTGTCT 23885 Query 179 CGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGG 238 |||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| Sbjct 23886 CGCGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGG 23945 Query 239 ACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| | ||||||||||| || |||||||||||| Sbjct 23946 ACGTACTACCGCCCCAGGATGCGATGAGCCGACATCG 23982 >seq1346 Length=39314 Score = 172 bits (190), Expect = 9e-41 Identities = 154/189 (81%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 88 CACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTA-AGGACAGCTCCTCTCAAATTTCC 146 ||||| |||||| | ||||||||||||||||| | || ||||||||| ||||| Sbjct 4387 CACCATAGGTTTACTTAATCCGGTCCTCTCGTACTAGAATTTAG-TCCTCTCAATTTTCC 4329 Query 147 TACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGC 206 | | ||||| |||||||||||||||||||| |||||||||||||||||||| ||| | Sbjct 4328 CAA-CTTACGACAGATAGGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTAC 4270 Query 207 CTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAG 266 | ||||||| ||||||||| | |||||||| |||| || |||| ||||||| || ||| Sbjct 4269 CACTTTAATCGGCGAACAGTCGAACCCTTGAAACCTTCTACAGCTTCAGGATGTGATGAG 4210 Query 267 CCGACATCG 275 ||||||||| Sbjct 4209 CCGACATCG 4201 >seq81 Length=49885 Score = 118 bits (130), Expect = 2e-24 Identities = 98/117 (84%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 ||||| |||||||||| || | |||||||||||||||||| ||||| |||| || || Sbjct 41640 GATAGCAACCGAACTGTTTCACAACGTTCTGAACCCAGCTCATGTGCCACTTTCATCAGC 41699 Query 220 GAACAGCCCAACCCTTGGGACCTACTT-CAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||| ||||||||| ||| |||| |||| |||||||| ||| ||||||||||| Sbjct 41700 GAACAGCTGAACCCTTGGAACC-ACTTACAGCTCCAGGATGTGACAAGCCGACATCG 41755 >seq2034 Length=43037 Score = 95.1 bits (104), Expect = 2e-17 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 178 TCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGG 237 || ||||||||| |||||| ||| ||| || ||||||| ||||||||||| ||||||||| Sbjct 34729 TCACGACGTTCTAAACCCAACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGG 34788 Query 238 GACCTACTTCAGCCCCAGGA 257 |||| ||||||| |||||| Sbjct 34789 AACCTTCTTCAGCTCCAGGA 34808 >seq1834 Length=181004 Score = 91.5 bits (100), Expect = 2e-16 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| ||||| |||||||| | | || |||| |||| Sbjct 113 GCTTAGATGCTTTCAGCGGTTATCTCTTCCGCACTTAGCTACTCGGCGATGCCACTGGCG 54 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTA 123 ||||| | | |||||||||| ||||| ||||||||||||||||| Sbjct 53 TGACAACCGATACACCAGAGGTGCGTCCACTCCGGTCCTCTCGTACTA 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780783623940