Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1490 271 2e-70 seq100 201 3e-49 seq1346 120 7e-25 >seq1490 Length=214893 Score = 271 bits (300), Expect = 2e-70 Identities = 234/290 (81%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||||||||||||||||| |||||||||| |||| |||||| |||| ||||| Sbjct 75003 CTTTACAACCCGAAGGCCTTCTTCACTCACGCGGCATTGCTGGATCAGGGTTGCCCCCAT 74944 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 74943 TGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 74884 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||||||||| ||||||||||||||||| |||||| |||| ||| ||| ||||||| || Sbjct 74883 TGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTTGCCTTGGTAGGCTTTTACCCCACC 74824 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| || | || ||| || |||| | | |||||| |||| Sbjct 74823 AACTAGCTAATCAGATATCGGCCGCTCCAGGAGCATGAGGTCTTGCGATCCCCCACTTTC 74764 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCC 293 || || |||||||||||||| | |||| | | |||||||||| Sbjct 74763 ATCCGTAGATCGTATGCGGTATTAGCTAGTCTTTCGACTAGTTATCCCCC 74714 >seq100 Length=112360 Score = 201 bits (222), Expect = 3e-49 Identities = 161/193 (83%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | |||| | ||| ||| ||| || |||| |||| |||| ||| || Sbjct 27774 CTTTACAACCTAATTAGCCTCCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 27833 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27834 TTGTCCAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 27893 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| ||||||||||| | |||||| ||||||||||| ||| ||| || || | Sbjct 27894 GTGGCTGATCATCCTCTCAAATCAGCTACTGATCGTCGCCTTGGTAAGCCTTTCCCTTAC 27953 Query 183 CAACTAGCTAATC 195 ||||||||||||| Sbjct 27954 CAACTAGCTAATC 27966 >seq1346 Length=39314 Score = 120 bits (132), Expect = 7e-25 Identities = 133/178 (75%), Gaps = 7/178 (4%) Strand=Plus/Minus Query 19 GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCC 78 || ||| ||| ||||| || ||| |||| |||| ||| ||||| ||||||||||| Sbjct 5846 GCTTTCCTCACTCACGCAATATCACTGGATCAAGCTTTCGCTGATTGTCCAATATTCCCC 5787 Query 79 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTC 138 ||||||| | |||||||||| | ||||||||||| |||||||| || | | | Sbjct 5786 ACTGCTGACAT-------AGTCTGGACCTTATCTCAGTTCCAATGTGGCTGATCGTTCGC 5734 Query 139 TCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCC 196 | |||||||| |||||| | || |||| ||| ||||||| ||||| | ||||||| Sbjct 5733 CAAAACCAGCTAAGGATCGCAGGCTTGGTGAGCCTTTACCCCACCAACCACCTAATCC 5676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222373535040