Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1490 338 2e-90 seq100 338 2e-90 seq1346 136 1e-29 seq81 120 9e-25 seq106 104 7e-20 >seq1490 Length=214893 Score = 338 bits (374), Expect = 2e-90 Identities = 289/362 (80%), Gaps = 26/362 (7%) Strand=Plus/Plus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 |||||||||||||||||| ||||| || ||||||||| |||||||||||| | |||| Sbjct 74809 TCTGATTAGCTAGTTGGTGGGGTAAAAGCCTACCAAGGCAACGATCAGTAGCTGGTCTGA 74868 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| || | |||||| ||| |||||||||||| ||| ||||||||||||||||||||| Sbjct 74869 GAGGACGACCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGT 74928 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 ||||||| ||| |||||||| || |||||| |||||| |||||||||| || |||||| Sbjct 74929 GGGGAATTTTGGACAATGGGGGCAACCCTGATCCAGCAATGCCGCGTGAGTGAAGAAGGC 74988 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA-------------------------TA 378 |||||||| |||||||||| | ||| |||||| || Sbjct 74989 CTTCGGGTTGTAAAGCTCTTTTGTCAGGGAAGAAACGGTAGTAGCGAATAACTATTACTA 75048 Query 379 ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 438 |||||||||| ||| || |||| |||||||||||||||||||||||||||||||||||| Sbjct 75049 ATGACGGTACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 75108 Query 439 AGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAG 498 |||| || ||||||| |||||||||| |||||||||| ||||| ||| ||||| ||| Sbjct 75109 AGGGTGCGAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGTTTTGAAAG 75167 Query 499 TC 500 || Sbjct 75168 TC 75169 >seq100 Length=112360 Score = 338 bits (374), Expect = 2e-90 Identities = 279/333 (84%), Gaps = 9/333 (3%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| || Sbjct 27973 CGCGTCTGATTAGCTAGTTGGTAAGGGAAAGGCTTACCAAGGCGACGATCAGTAGCTGAT 27914 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 ||||||| ||||| |||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 27913 TTGAGAGGATGATCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAG 27854 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||| ||||| ||| |||||| || ||||| |||| |||||| ||| ||||| |||| Sbjct 27853 CAGTGAGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCGAGTGAGTGATGG 27794 Query 340 AGGC-CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGA 398 |||| | ||| |||||||||| || | ||||| || |||||| |||||| | | || Sbjct 27793 AGGCTAATTAGGTTGTAAAGCTCTTTCATTAAGGAGGAAAATGACAGTACTTAAAAAAGA 27734 Query 399 AGCCCCGGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGG--GCTAGCGTTAT 454 || |||||||| || |||||||||||||||||||| || ||||| || || ||||| Sbjct 27733 AGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAAGAC--AGGGGATGCGAGTGTTAT 27677 Query 455 CCGGAATTACTGGGGCGTAAAGGGTGCGTAGGT 487 ||||||||| | |||||||||| || |||||| Sbjct 27676 CCGGAATTA-TTGGGCGTAAAGCGTCTGTAGGT 27645 >seq1346 Length=39314 Score = 136 bits (150), Expect = 1e-29 Identities = 232/340 (68%), Gaps = 35/340 (10%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| | |||||| ||||| |||| |||||| | ||||| |||| | | | | Sbjct 5677 GATTAGGTGGTTGGTGGGGTAAAGGCTCACCAAGCCTGCGATCCTTAGCTGGTTTTGGCG 5736 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 |||| |||||||||||||||||| | |||||| ||| | |||||||||| Sbjct 5737 AACGATCAGCCACATTGGAACTGAGATAAGGTCCAGACT-------ATGTCAGCAGTGGG 5789 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC--- 343 |||||||| ||||| || ||||| |||| ||| | ||||||| || ||| || Sbjct 5790 GAATATTGGACAATCAGCGAAAGCTTGATCCAGTGATATTGCGTGAGTGAGGAAAGCACA 5849 Query 344 -----CTTCGGG---------------TC----GTAAAGCTCTGTCCTCAAGGAAGATAA 379 |||||| || ||||| ||| || | | ||| || || Sbjct 5850 AAAAGATTCGGGAGTAACTAACCCGAATCGGCTGTAAAACTCGTTCGTTAGGGAGGAAAA 5909 Query 380 TGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTA 439 |||| |||| | | || ||||| ||||| ||| ||||||||| ||||||||||| || Sbjct 5910 TGACTGTACCTAAAGAAGAAGCTCCGGCCAACCTCGTGCCAGCCGCCGCGGTAATGCGGG 5969 Query 440 GGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGT 479 ||| || |||||||||| || | | |||||||||| || Sbjct 5970 GGGAGCGAGCGTTATCCATCATGA-TTGGGCGTAAAGTGT 6008 >seq81 Length=49885 Score = 120 bits (132), Expect = 9e-25 Identities = 226/321 (70%), Gaps = 10/321 (3%) Strand=Plus/Minus Query 174 TAGTTGGTAAGGTAACGGCTTACCAAGGC-GACGATCAGTAGCCGAC-CTGAGAGGGTGA 231 |||||||| ||||| || ||||||| | ||| || | || || |||||||| ||| Sbjct 45882 TAGTTGGTGTGGTAAAAGCATACCAAGCCAGAC-ATGCTTTGCTGAATCTGAGAGGATGA 45824 Query 232 TCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATA 291 | ||||||| ||| ||||| |||||| |||| | | | ||||||||||| |||||| Sbjct 45823 ACAGCCACATGAGAATTGAGA-ACGGTCTCAACTTCGATTGAAGGCAGCAGTGTGGAATA 45765 Query 292 TTGCACAATGGGCAAAA-GCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGG 350 || |||| | | ||| | ||| | |||| ||| |||||||| | | Sbjct 45764 GTGGGCAATAGACTAAACGTTTGACCCCGCAATATTCATGGAGTGATGAAGGTGT--GAA 45707 Query 351 TCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAA 410 | ||||| |||| | | || | ||||||| || || | | | ||| |||||||| Sbjct 45706 TTGTAAAACTCTTACTTGAATAAGTATAATGAATGTCATTCAAG-GTTAGCACCGGCTAA 45648 Query 411 CTA-CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGG 469 | ||||||||| |||||||||||||| || || || ||||| | | ||||| ||| Sbjct 45647 TTCTCGTGCCAGCCGCCGCGGTAATACGGGTGGTGCAAGTGTTATTCCTATTTACT-GGG 45589 Query 470 CGTAAAGGGTGCGTAGGTGGT 490 |||||||||| |||| |||| Sbjct 45588 TGTAAAGGGTGTGTAGATGGT 45568 >seq106 Length=84632 Score = 104 bits (114), Expect = 7e-20 Identities = 131/175 (75%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 303 GCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCT-TCGGGTCGTAAAGCTC 361 || ||||| |||| |||||| ||| ||||| |||| |||| | | | ||||||||| Sbjct 38126 GCGAAAGCTTGATCCAGCAATACCGAGTGAGTGATGGAGGCTAATTAGCTTGTAAAGCTC 38185 Query 362 TGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGA-AGCCCCGGCTAACTACGTGCCA 420 | || | || || || |||| | |||||||| || | || |||||||| | ||||||| Sbjct 38186 TTTCATTAAAGAGGAAAATGGCAGTACTTGAA-AGTATAGTTCCGGCTAATTCCGTGCCA 38244 Query 421 GCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAA 475 | ||||||||||||||| || || ||| |||| | |||| | | |||||||| Sbjct 38245 GTAGCCGCGGTAATACGGTTGGAGCGAGCATTATTCAGAATGA-TCAGGCGTAAA 38298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497567576960