Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1490 365 1e-98 seq100 199 9e-49 seq1580 89.7 1e-15 seq81 82.4 2e-13 seq1346 78.8 2e-12 >seq1490 Length=214893 Score = 365 bits (404), Expect = 1e-98 Identities = 328/409 (80%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||| || |||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 75056 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 75115 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 ||||||| |||||||||||||||||||| ||||| ||| ||||| |||||||| || Sbjct 75116 GAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTTTGAAAGTCAGATGT 75175 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 |||| | ||||||| || ||||| ||||||||| || |||||||| ||||| Sbjct 75176 GAAATCCCCGAGCTCAACTTGGGAACTGCGTTTGAAACTCCAAAGCTAGAGTATAGGAGA 75235 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || || ||||||| ||||||| |||||||||||||| || ||||||| |||| ||| Sbjct 75236 GGGGGGTAGAATTCCACGTGTAGCAGTGAAATGCGTAGAGATGTGGAGGAATACCAATGG 75295 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 ||||||| || |||| || |||||| || | || |||||||||||||||||||||| Sbjct 75296 CGAAGGCAGCCCCCTGGCCTAATACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 75355 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGG-GGCGCATA 359 |||||||||||||||||||||||||| ||||||||| |||||| ||| || || | | | Sbjct 75356 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATGTCTACTAGTTGTTGGTGGAGTA-A 75414 Query 360 AGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | | || |||||| ||||| ||||| || ||||||||||| Sbjct 75415 AATCCATTAGTAACGCAGCTAACGCGTGAAGTAGACCGCCTGGGGAGTA 75463 >seq100 Length=112360 Score = 199 bits (220), Expect = 9e-49 Identities = 295/413 (71%), Gaps = 15/413 (4%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGG 58 ||||| | | |||| |||||||| ||| ||||||||||||||||||| || ||||| Sbjct 27746 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAAGAC--AGGGG 27690 Query 59 --GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAG 116 || || |||||||||||||| ||||||||||| || |||||| | | ||||| Sbjct 27689 ATGCGAGTGTTATCCGGAATTATTGGGCGTAAAGCGTCTGTAGGTTGAATTCAAAGTCTT 27630 Query 117 AGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAG 176 || ||| | ||||||| || || || ||| || |||| | Sbjct 27629 TTGTAAAATCTTTAAGCTCAACTTAAAAACCGCAAAAGATACTAGTTTTCTTGAGTATGG 27570 Query 177 GAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCA 236 || || || |||||| | |||| |||||||||||||||||| ||| | |||||||||| Sbjct 27569 TAGAGGTAAAGGGAATTTCCAGTGGAGCGGTGAAATGCGTAGAGATTGGAAGGAACACCA 27510 Query 237 GTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 |||||||| || |||| | | ||||||||||||| ||||||| |||||||| Sbjct 27509 AAAGCGAAGGCACTTTACTGGGCCATTACTGACACTGAGGGACGAAAGCTAAGGGAGCAA 27450 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGC 356 || ||||||||||||| ||||||| || |||||| ||| ||||||| ||| | Sbjct 27449 ACGGGATTAGATACCCCGGTAGTCTTAGCAGTAAACCATGGATACTAGATGTTG------ 27396 Query 357 ATAAGT-GCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| | | | ||| || || ||||| ||||||| || |||||| |||| Sbjct 27395 -TAAATATTTACAGTGTCGTAGTTAACGCGTTAAGTATCCCGCCTGGGAAGTA 27344 >seq1580 Length=47052 Score = 89.7 bits (98), Expect = 1e-15 Identities = 113/155 (73%), Gaps = 8/155 (5%) Strand=Plus/Minus Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||| | | || || | | |||||||| |||| ||| ||||| | || | |||||||| Sbjct 8708 GAATTTCAATTGGAGTGATAAAATGCGTTGATAATAGAAGGAAGATCAATTGCGAAGGCA 8649 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 | | | || ||||||||||| |||||| |||| ||| ||| ||||||||| Sbjct 8648 AC-------AATTTA-CTGACACTGAGAAACGAAAGTTTGGGTAGCGAACGGGATTAGAT 8597 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 | || ||||||||| | ||| ||||||| | ||| Sbjct 8596 ATCCCGGTAGTCCATACTGTAGACGATGAGTGCTA 8562 >seq81 Length=49885 Score = 82.4 bits (90), Expect = 2e-13 Identities = 74/92 (80%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 14 AGCCCCGGCTAACTA-CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 ||| |||||||| | ||||||||| |||||||||||||| || || || ||||| | Sbjct 45659 AGCACCGGCTAATTCTCGTGCCAGCCGCCGCGGTAATACGGGTGGTGCAAGTGTTATTCC 45600 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104 | |||||||| |||||||||| |||| |||| Sbjct 45599 TATTTACTGGGTGTAAAGGGTGTGTAGATGGT 45568 >seq1346 Length=39314 Score = 78.8 bits (86), Expect = 2e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| | | || ||||| ||||| ||| ||||||||| ||||||||||| || ||| || Sbjct 5916 TACCTAAAGAAGAAGCTCCGGCCAACCTCGTGCCAGCCGCCGCGGTAATGCGGGGGGAGC 5975 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGT 93 |||||||||| || | ||||||||||| || Sbjct 5976 GAGCGTTATCCATCATGATTGGGCGTAAAGTGT 6008 Score = 78.8 bits (86), Expect = 2e-12 Identities = 89/118 (75%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 226 GAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGC 285 |||||| ||||||||||| |||| || |||| || |||||| |||| |||||| Sbjct 6147 GAGGAATGCCAGTGGCGAAAGCGGTTTTCTGGGACGT-ACTGACGCTGAACGACGAAAGT 6205 Query 286 GTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 |||||| |||| | ||||||||| | |||||||| | || || |||||||| || Sbjct 6206 ATGGGGATCAAATGGAATTAGATACTCCAGTAGTCCATACTGTCAAAGATGAATATTA 6263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203173950720