Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq151 313 5e-83 seq1731 288 2e-75 seq1732 273 4e-71 seq1571 260 3e-67 seq1767 212 1e-52 seq453 185 2e-44 seq863 150 3e-34 seq87 113 9e-23 seq1327 107 4e-21 >seq151 Length=6618 Score = 313 bits (346), Expect = 5e-83 Identities = 260/315 (83%), Gaps = 6/315 (2%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGC-TTTGGCGGGTCGCC---GGCTTC 75 || ||||||||| ||||||||||||| | || | ||| | || | | | |||| Sbjct 5703 GAACGAGACCTTGACCTGCTAAATAGACGGGTTGACATTTTGTTGGCCCCTTATGTCTTC 5762 Query 76 TTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATG 133 ||||||||||||||| | || || |||||| | |||||||||||||||||||||| Sbjct 5763 TTAGAGGGACTATCGACCGTCTAGGTGATGGAGGCAAAAGGCAATAACAGGTCTGTGATG 5822 Query 134 CCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCT 193 ||||||||||||| |||| ||||||||||||||||||||||| |||||||| | ||| Sbjct 5823 CCCTTAGATGTTCCGGGCTGCACGCGCGCTACACTGACAGAGACAACGAGTGGGGCCCCT 5882 Query 194 TGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAA 253 || ||| || | |||||||| ||||| ||||| ||||||||||||||| |||| ||| || Sbjct 5883 TGTCCGAAATGACTGGGTAAACTTGTGAAACTTTGTCGTGCTGGGGATGGAGCTTTGTAA 5942 Query 254 TTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACG 313 || ||||||||||||||||||| |||||||||||| ||||||||| ||||||| |||| Sbjct 5943 TTTTTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGACTACG 6002 Query 314 TCCCTGCCCTTTGTA 328 ||||||||||||||| Sbjct 6003 TCCCTGCCCTTTGTA 6017 >seq1731 Length=8278 Score = 288 bits (318), Expect = 2e-75 Identities = 221/259 (85%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||||||| |||| | || | || ||||||| | ||||||||||||||||| Sbjct 3014 CTTCTTAGAGGGACTTTCGGTGATTAATC-GAAGGAAGTTGGGGGCAATAACAGGTCTGT 3072 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| ||||||||||||||||||||||||||| | || |||||| Sbjct 3073 GATGCCCTTAGATGTCCTGGGCCGCACGCGCGCTACACTGACACACGCAGCGAGTTTT-- 3130 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||| ||| ||||||||||||||||||| || | ||||||| | |||||||| ||| Sbjct 3131 -CCTTGTCCGAAAGGTCTGGGTAATCTTGTAAATGTGTGTCGTGATAGGGATAGATTATT 3189 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| |||| |||||||||| |||||||| ||| ||||||||| ||||||||| Sbjct 3190 GCAATTATTAATCTTGAACGAGGAATTCCTAGTAAATGCGGGTCATCAGCTCGCGTTGAT 3249 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 3250 TACGTCCCTGCCCTTTGTA 3268 >seq1732 Length=9078 Score = 273 bits (302), Expect = 4e-71 Identities = 216/258 (84%), Gaps = 1/258 (0%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||||||||| | |||||| ||||||| |||||||||||||||||||| Sbjct 8784 CTTCTTAGAGGGACTATCGGTGTGTAGCCGACGGAAGTTCGAGGCAATAACAGGTCTGTG 8725 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||||||||||||||||||||||||||| | || | |||| | | Sbjct 8724 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCATGCATCAAGTTTACAA 8665 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||| | | | |||||||||||||| || | |||||||||||||||| |||| Sbjct 8664 CCTTGACTGATAAGTCTGGGTAATCTTTGCAACATGCATCGTGCTGGGGATAGATGATTG 8605 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| ||||||||||||||| |||||||| ||| ||||||| | || |||||| Sbjct 8604 TAATTATTCATCTTCAACGAGGAATTCCTAGTAAACGCAAGTCATCAACTTGCATTGATT 8545 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 8544 ACGTCCCTGCCCTTTGTA 8527 >seq1571 Length=97646 Score = 260 bits (288), Expect = 3e-67 Identities = 214/260 (82%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | ||||||| |||||||||||||||||| Sbjct 15409 CTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGTCTG 15350 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 15349 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCGTTCAACGAGTATAT 15290 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||| || |||||||||||||||||| || ||||||| |||||||| | Sbjct 15289 AACCTTGATCGATAGGTCTGGGTAATCTTGTGAATGCGCATCGTGCTAGGGATAGACTGT 15230 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| | |||| |||||||||| |||||||| || ||||||||| ||||||| Sbjct 15229 TGCAATTTTCAGTCTTGAACGAGGAATTCCTAGTAAATGCAAGTCATCAGCTTGCGTTGA 15170 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 15169 TTACGTCCCTGCCCTTTGTA 15150 >seq1767 Length=130814 Score = 212 bits (234), Expect = 1e-52 Identities = 203/259 (78%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 ||||||||||| ||| | || |||| |||| ||||||| ||||||||||||||||||| Sbjct 11924 CTTCTTAGAGGAACTTTGGGTAATCAAACCGAAGGAAGTTGGAGGCAATAACAGGTCTGT 11983 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||||||||||||||||||| ||||| |||||||| || Sbjct 11984 GATGCCCTTAGATGTTCTGGGCCGCACGCGC-----ACTGATGCGTTCAACGAGTATATA 12038 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 |||||| || |||||||||||||||||| || ||||||| |||||| || Sbjct 12039 ACCTTGATCGACAGGTCTGGGTAATCTTGTGAATGCACATCGTGCTAAAGATAGACTGTT 12098 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||||| |||| || ||||| | |||||||| || ||||| || |||||||| Sbjct 12099 GCAATTATCAGTCTTGAATGAGGAGTTCCTAGTAAATGCAAATCATCTGCTTGCGTTGAT 12158 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||| ||||||||||||| Sbjct 12159 TACGTTCCTGCCCTTTGTA 12177 Score = 86.0 bits (94), Expect = 1e-14 Identities = 181/266 (68%), Gaps = 13/266 (5%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTC---AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||| | |||||||||| || | || || | || || | |||||||||| ||||| Sbjct 56100 CTTCCTTGAGGGACTATTGGGTAGTTAAACCAAAAAAATTTGGGGGCAATAACAAGTCTG 56159 Query 129 TGATGCCCT-TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187 ||| | ||| ||||| | ||||||| ||||||| ||||||||| |||||||| | Sbjct 56160 TGACGTCCTATAGATATCCTGGGCCACACGCGCACTACACTGATGCGTTCAACGAGTATA 56219 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT--CGTGCTGGGGATAGAG 245 | | ||| | |||||||||| |||||| | | ||| || | | |||| ||| Sbjct 56220 T-AGCTTCATCAATAGGTCTGGGTTATCTTGCGTAGATGTGTATCGCGTTAGGGAAAGAC 56278 Query 246 CATTGCAATTATTGCTCTTCAACG------AGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 |||||||| | || || | || ||| |||| || || ||||||||| Sbjct 56279 TGTTGCAATTTCTAGACTAGAAAGCCCTAAAGAAATTTCTAGAAAATGCAAGTCATCAGC 56338 Query 300 ACGCGTTGATTACGTCCCTGCCCTTT 325 | |||| ||||||||||| ||| Sbjct 56339 TTGTGTTGTCAACGTCCCTGCCATTT 56364 >seq453 Length=12031 Score = 185 bits (204), Expect = 2e-44 Identities = 201/261 (77%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||||| ||||| |||||| |||||| | |||||||||||||||||| Sbjct 2300 CTTCTTAGAGGGACTGTCGGCGATTAGCCGAAGGAAGT--GCGGCAATAACAGGTCTGTG 2243 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| || ||| ||||||||||||||||| | | ||| |||| | | Sbjct 2242 ATGCCCTTAGATGTCCTAGGCTGCACGCGCGCTACACTGTCTGGTACAATGAGTCTACAA 2183 Query 191 -CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 || | ||| ||| ||| |||||||| || || |||| ||||||| || |||| Sbjct 2182 TGCTGGTCCGATAGGATTGGCGAATCTTGTGAATGCTTGACGTGATGGGGATTGATCATT 2123 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATC--AGCACGCGTTG 307 | |||||||| || | |||||||||| ||| ||| | | ||||| |||| || | Sbjct 2122 GAAATTATTGGTCATGAACGAGGAATTCCTTGTAGGTATGCTTCATCAAAGCATGC--CG 2065 Query 308 ATTACGTCCCTGCCCTTTGTA 328 | ||||||||||||||||||| Sbjct 2064 ACTACGTCCCTGCCCTTTGTA 2044 >seq863 Length=9128 Score = 150 bits (166), Expect = 3e-34 Identities = 215/279 (77%), Gaps = 28/279 (10%) Strand=Plus/Plus Query 67 GCCGGCTTCT--TAGAGGGACT-ATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAAC 121 ||| |||||| |||||||||| || | ||| | ||| | |||||||||||||||||| Sbjct 4449 GCCAGCTTCTCGTAGAGGGACTCATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAAA 4507 Query 122 AGGTCTG-TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG-ACAGAG-CCA 178 |||||| |||||||||||||||||||||| |||||||| |||| |||| | || || Sbjct 4508 GGGTCTGGTGATGCCCTTAGATGTTCTGGG-CGCACGCG-GCTA-ACTGTATGTAGTTCA 4564 Query 179 ACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGG- 237 |||||| || ||||||| |||| | |||||||||| | ||| | ||||| ||| Sbjct 4565 ACGAGTCTATAGCCTTGGCGACAAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGG 4623 Query 238 ---GGATA-GAGCATTGCAATTATT--GCTCTTCAACGAGGAATGCCTAGTAA-GCGCGT 290 ||||| || |||||||||| || | | ||||||||| || | ||||| |||| Sbjct 4624 GTTGGATATGATCATTGCAATTGTTTAGGT-TTCAACGAG--ATTCTAAGTAATCCGCGA 4680 Query 291 GTCATCAGCACGC-GTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| ||| |||||| || ||||||||||||| Sbjct 4681 GTCATCAGCTCGCTGTTGAT--AGT-CCTGCCCTTTGTA 4716 >seq87 Length=14717 Score = 113 bits (124), Expect = 9e-23 Identities = 178/254 (70%), Gaps = 31/254 (12%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||| | Sbjct 3609 GGAAGTTTAAGGCAATAACAGGTCTGTGATGCCCTTAGATGCCCTGGGCAGCACGCGTAC 3668 Query 163 TACACTG---------ACAGAGCCA--AC---------------GAGTTCA-TCACCTTG 195 ||||||| ||| || || || | ||||| | |||| Sbjct 3669 TACACTGTTAATACTAACA-AGTCAGTACAATGTGAATACTTCGGTGTTCACTGGCCTTC 3727 Query 196 GCC-GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254 || |||| |||| |||||| | |||| | |||| ||||||| ||| ||| Sbjct 3728 TCCTTAAAGGAGTGGGAAATCTTTTCAAACATTAACGTGACAGGGATAGCTGTTTGGAAT 3787 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 | |||| |||||||||| |||||||| |||| |||| | ||| |||||||||| Sbjct 3788 --TCCATCTTGAACGAGGAATTCCTAGTAATCGCGATTCATTATATCGCATTGATTACGT 3845 Query 315 CCCTGCCCTTTGTA 328 ||||||| |||||| Sbjct 3846 CCCTGCCTTTTGTA 3859 >seq1327 Length=71880 Score = 107 bits (118), Expect = 4e-21 Identities = 163/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||||| || |||||||| || ||||| | |||||||| |||| |||||||| ||| Sbjct 37541 GGAAGTT-GAAACAATAACAAGTTTGTGACGT--TTAGATGTCCTGGACCGCACGCACGC 37597 Query 163 TACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA 222 |||||||| ||| |||| || ||||| || ||||||||||| | |||| Sbjct 37598 TACACTGATGCGTTCAATGAGTATATAGCCTTGATCGATAGGTCTGGGTACTTTTGTGTG 37657 Query 223 ACTCTG--TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280 || || ||||||| |||||||| ||||| | || |||| || ||| || ||| Sbjct 37658 GCTGTGCATCGTGCTAGGGATAGACTGTTGCAGATCTTAGTCTTGAAAGAGAAAGTTCTA 37717 Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| || ||||| | | || |||||||| || ||||||||| Sbjct 37718 GTAAATGCAAGTCAT---CTTGTTTTAATTACGTCTCTACCCTTTGTA 37762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947179493120