Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1490 529 6e-148 seq100 217 5e-54 seq653 127 7e-27 seq81 86.0 2e-14 seq1346 77.0 1e-11 >seq1490 Length=214893 Score = 529 bits (586), Expect = 6e-148 Identities = 418/495 (84%), Gaps = 6/495 (1%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||| Sbjct 77404 CGAGTCCGAATAGGGCGATAGTTGCTGGGTGTAGACCCGAAACCAAGTGATCTATCCATG 77463 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 |||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| Sbjct 77464 GCCAGGATGAAGGTTGGGTAACACCAACTGGAGGTCCGAACCCACAAATGTTGAAAAATT 77523 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 77524 TGGGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 77583 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGGC 241 ||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| Sbjct 77584 CCGAAAACTATTTAGGTAGTGCCTCGTAAATCACTCTTGGGGGTAGAGCACTGTTATGGC 77643 Query 242 TAGGGGG-TCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTACC 300 ||||||| |||| |||||||||||||||||||||||||||| | | ||| | Sbjct 77644 TAGGGGGTTCATAAGAACTTACCAAACCATTGCAAACTCCGAATACTGAGAAGTGCAATT 77703 Query 301 GCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATC 360 |||||| || |||||||||||| ||||||| | ||||| || || || ||| | Sbjct 77704 ACGGGAGACAGTCCATGGGTGCTAACGTCCGTGGACAAGAGGGAAACAACCCAGACCGCC 77763 Query 361 AGCTAAGGCCCCGAAATGAC-AGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419 |||||||| ||| ||||||| ||||||| || |||||||| || || ||||||| Sbjct 77764 AGCTAAGGTCCC-AAATGACGTGCTAAGTGGAA--AACGAAGTGGGAAGGCATAGACAGC 77820 Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGA 479 ||||| |||||||| |||||||||| || |||||||| |||||| |||||||||||||| Sbjct 77821 TAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAATAGCTCACTAGTCGA 77879 Query 480 GGAGTCGGGCGTGGA 494 | ||| ||| ||| Sbjct 77880 GTCGTCCTGCGCGGA 77894 >seq100 Length=112360 Score = 217 bits (240), Expect = 5e-54 Identities = 392/563 (70%), Gaps = 29/563 (5%) Strand=Plus/Minus Query 9 GAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGA 68 ||| || |||| |||| || | |||||||||| || ||||||| ||||| ||||| Sbjct 25876 GAATAGAGCGAAAGTCACTAATTATAGACCCGAACCCGCTTGATCTAACCATGTCCAGGG 25817 Query 69 TGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGAT 128 |||| | ||| |||| ||||| ||||||| ||||||||||||||||||| |||| Sbjct 25816 TGAAACTTAGGTGACACTAAGGGGAGGCCCGAACCGACTAATGTTGAAAAATTAGCGGAT 25757 Query 129 GAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAA 188 ||| ||||| ||||||||||| || || | || ||| |||||||||||| |||||| Sbjct 25756 GAGGTGTGGTTAGGGGTGAAATGCCAATCGAAAGCGGAGCTAGCTGGTTCTCCCCGAAAT 25697 Query 189 CTATTTAGGT--AGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGGCTAGGG 246 |||| |||| || | | | | | | ||| |||||| ||||||||| | | || Sbjct 25696 GTATTGAGGTGCAGCGGTTAATCTTTTAGCAT-AGGGGTAAAGCACTGTTTT--AAACGG 25640 Query 247 GGTCATTGCGACT--TACCAAACCATTGCAAACTCCGAATGCGCATCAGT----TTTACC 300 || || | ||| |||| | |||||||| |||| | || || || ||| Sbjct 25639 GGCCACAACAACTGGTACCTTATTGAGGCAAACTCTGAATAC-TATGTGTACAATTAACC 25581 Query 301 GCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATC 360 ||| || ||| | | |||| | | | | ||||| || | || || | | Sbjct 25580 -----AGTAAGACTATGAGGGATAAGCTTCATTGTCAAGAGGGAAACAGCCCAGATCACC 25526 Query 361 AGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCT 420 || ||||||||| |||||| |||||| ||| || ||||| | ||||| ||| | Sbjct 25525 AGTTAAGGCCCCTAAATGATTACTAAGTGAAA--AAGGAAGTGAAAAGGCTAAAACAACC 25468 Query 421 AGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||| ||| |||| ||||||| || || |||||| ||||||||| |||| ||| ||| || Sbjct 25467 AGGAGGTTCGCTTAGAAGCAG-CAATCCTTTAAAAAGTGCGTAATAGCTTACTGGTCTAG 25409 Query 481 GAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT-----C 535 ||| ||| || ||| | ||| | ||||| | | ||||||| ||| ||| | Sbjct 25408 CAGTTTTGCGCCGAAAATTTTTGGG-ACTAAGTAATTTGCCGAAGCTGTGAGATATAAAC 25350 Query 536 ATTTATATGATCGGTAGGGGAGC 558 | |||| |||||||||||||| Sbjct 25349 AATTAT---ATCGGTAGGGGAGC 25330 >seq653 Length=1731 Score = 127 bits (140), Expect = 7e-27 Identities = 153/197 (78%), Gaps = 11/197 (6%) Strand=Plus/Minus Query 9 GAACAGGGCGACAGTC-GCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGG 67 ||| ||||||| ||| | ||| |||||| ||||||| ||||||||||||||| |||| Sbjct 1520 GAATAGGGCGATAGTAAGAAGGGGGTAGACGCGAAACCTTGTGATCTACCCATGGACAGG 1461 Query 68 ATGAAGGTG-CGGTAACACGCCCTGGAGGTCCGAACCCACTAA--TGTTGAAAAATTAGG 124 |||||||| | |||||| | |||||| |||||| | || |||||||| || Sbjct 1460 TTGAAGGTGCCCGTAACAGG--TTGGAGG-ACGAACCGATAAAACCGTTGAAAAGTTTCC 1404 Query 125 GGATGAGCTGT-GGGTAGG-GGTGAAAGGCTAAA-CAAACTTGGAA-ATAGCTGGTTCTC 180 |||||| |||| ||||||| |||||||||||||| |||||| |||| | ||| || ||| Sbjct 1403 GGATGATCTGTGGGGTAGGAGGTGAAAGGCTAAATCAAACTGGGAATAAGGCTCGTACTC 1344 Query 181 TCCGAAAACTATTTAGG 197 |||||| | |||||| Sbjct 1343 CCCGAAATGTTTTTAGG 1327 >seq81 Length=49885 Score = 86.0 bits (94), Expect = 2e-14 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 124 GGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCC 183 ||||||| |||| |||||||||||||| || ||||||||| ||||||||||| ||| | Sbjct 43476 GGGATGAATTGTGAATAGGGGTGAAAGGCCAATCAAACTTGG-AATAGCTGGTTTTCTGC 43418 Query 184 GAAAACTATTTAGGTAG 200 |||| ||||| |||||| Sbjct 43417 GAAATCTATTCAGGTAG 43401 >seq1346 Length=39314 Score = 77.0 bits (84), Expect = 1e-11 Identities = 121/171 (71%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 36 ACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGG-TGCGGTAACACGCCCTGGAG 94 ||||||| | | ||| ||| | ||| |||| |||| ||| ||| || || || Sbjct 2575 ACCCGAAGCTGAATGAGCTAACTATGAACAGGCTGAAAAATGCT-TAAAACCGTTTGAAG 2633 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 | |||||| | |||||| ||||| ||||||| ||| | ||||||||||||||| Sbjct 2634 GGCCGAACTCGTGGATGTTGCAAAATCTTGGGATGATTTGTAGTTAGGGGTGAAAGGCTT 2693 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCT 205 | |||| | | |||||||| | ||| ||||| |||||| ||| |||| Sbjct 2694 ATCAAATTCAGGGATAGCTGGATTTCTGCGAAATATATTTAAGTATAGCCT 2744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689563420160