Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1490 264 2e-68 seq653 138 2e-30 seq249 77.0 6e-12 seq100 75.2 2e-11 >seq1490 Length=214893 Score = 264 bits (292), Expect = 2e-68 Identities = 212/252 (84%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| | Sbjct 76789 AGTGCATATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTGATAGCCTGCGAAA 76848 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| |||||||| ||||| | ||||||||||| |||| ||||||||||||||||| | Sbjct 76849 AGCTACGGGGAGTTGGCAAATAAACTTTGATCCGTAGATATCCGAATGGGGAAACCCACC 76908 Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGG--TATGCAAAGCGAACGCGGCGAACTGAA 178 | |||| | || | ||||||| ||||| ||| |||||| | |||||||| Sbjct 76909 CGCAAGGGTAACCGC-TCCTGAATATATAGGGAGATG-GTGGCGAACCGAGTGAACTGAA 76966 Query 179 ACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 76967 ACATCTAAGTAGCTCGAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 77026 Query 239 ATGGGATGAGCC 250 || ||| |||| Sbjct 77027 ATCGGAGTAGCC 77038 >seq653 Length=1731 Score = 138 bits (152), Expect = 2e-30 Identities = 181/246 (74%), Gaps = 16/246 (7%) Strand=Plus/Plus Query 6 ACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 ||| || |||||||||||| | | |||||||||||||||| || |||||||||| Sbjct 733 ACACGGGGGATGCCTTGGCTCTCAGAGGCGATGAAGGACGTGATAAGCTGCGATAAGCAC 792 Query 66 CGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTT 125 |||||| | |||||| | |||||||| |||||||||||||||||||| | ||| Sbjct 793 CGGGGA-TCAGCAAATATGAATTGATCCGGTGATTTCCGAATGGGGAAACCTAACTATTT 851 Query 126 GGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTA 185 | || | || ||| |||| || ||| | ||||||||||||||| Sbjct 852 GAAGAAT----AGTTGCATA------AATGC---GCAAACCTGCTGAACTGAAACATCTA 898 Query 186 AGT-AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 ||| ||| | ||||| ||||| |||| | |||| ||| |||||||||||||||||||| | Sbjct 899 AGTAAGCAG-AGGAAGAGAAAACAACAGTGATTTCCAGAGTAGTGGCGAGCGAAATGGAA 957 Query 245 TGAGCC 250 |||| Sbjct 958 GAAGCC 963 >seq249 Length=9932 Score = 77.0 bits (84), Expect = 6e-12 Identities = 62/75 (83%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 171 GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGG 230 |||||||| ||||| |||| | ||||||||||||||| |||||| | ||||||||| Sbjct 1410 GAACTGAATCATCTTAGTAATTAAAGGAAAAGAAATCAAAAGAGATTATCTAAGTAGTGG 1469 Query 231 CGAGCGAAATGGGAT 245 ||||||||| || || Sbjct 1470 CGAGCGAAAGGGTAT 1484 >seq100 Length=112360 Score = 75.2 bits (82), Expect = 2e-11 Identities = 62/76 (82%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 171 GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGG 230 |||||||||||||| |||| || ||||||||||| || ||||||| |||||||| Sbjct 26375 GAACTGAAACATCTTAGTACCTAGAGGAAAAGAAAGTAAAAACGATTCCCGTAGTAGTGG 26316 Query 231 CGAGCGAAATGGGATG 246 ||| |||| ||||||| Sbjct 26315 CGAACGAACTGGGATG 26300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918380116640