Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1490 340 6e-91 seq100 217 5e-54 seq1346 105 2e-20 >seq1490 Length=214893 Score = 340 bits (376), Expect = 6e-91 Identities = 419/567 (74%), Gaps = 27/567 (5%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACT--CACCACCTGATTG 58 ||||| ||| ||||||||||||||| |||| ||| || |||| || || |||| Sbjct 79116 TCGACCTGTCCGTCTCGCAGTCAAGCAACCTTATGCCATTGCACTATCAGTAC--GATTT 79059 Query 59 CCAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCC 118 || ||| | ||| ||||| | | |||||||||| ||||||||| | ||||||| Sbjct 79058 CCGACCGTACCTAGGTTACCTTCGCACTCCTCCGTTACTCTTTGGGAGGAGA-CCGCCCC 79000 Query 119 AGTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATA-TC 177 ||| ||||| ||||||| |||| ||||||| |||||| |||| || |||||||| || Sbjct 78999 AGTCAAACTGCCCACCATGCACGGTCCCCAGTCCAGATAATGGACCTAGGTTAGAACCTC 78940 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCAT 237 || || |||| |||||||||||| |||||||| | ||| |||| |||| |||| Sbjct 78939 AACAACA-TCAGGGTGGTATTTCAAGGTTGACTCCACGAGAACTGGCGTCCCCGCTTCAT 78881 Query 238 AGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGG- 296 |||||||||||||||||||||||| | | || ||||| | |||||| ||| |||| Sbjct 78880 AGTCTCCCACCTATCCTACACAAATCTTGTCAAAGTCCAATGCAAAGCTACAGTAAAGGT 78821 Query 297 TCCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCA 356 || ||||||||| |||| |||||| | | ||||||| || | | ||| ||| Sbjct 78820 TCATGGGGTCTTTCCGTCTAGCCGCGGGTAGATTGCATCTTCACAAACATTTCAACTTCG 78761 Query 357 CCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTA 416 | | | | | ||||||| || |||||||||||||||||| |||||||||||| Sbjct 78760 CTGAGTCCCGAGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCGGGTCGGAACTTA 78701 Query 417 CCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGC 476 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | Sbjct 78700 CCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGAC 78641 Query 477 TTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCA 536 ||| || | | || ||| ||| ||| |||| ||||||||| Sbjct 78640 TTCGATCAAGAG-CTTGCACCCCA----------TCA--------ATTAATCTTCCAGCA 78600 Query 537 CCGGGCAGGCGTCAGTCCGTATACCTC 563 |||||||||||||| || ||||| || Sbjct 78599 CCGGGCAGGCGTCACACCCTATACGTC 78573 >seq100 Length=112360 Score = 217 bits (240), Expect = 5e-54 Identities = 392/567 (69%), Gaps = 17/567 (3%) Strand=Plus/Plus Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62 ||||||| ||||| |||| ||||| |||| | | || | ||| || ||| | | Sbjct 24120 GACTTGTTTGTCTCACAGTTAAGCTTCCTTTTACCTTTGCGCTCTTCAATCAATTTCTAT 24179 Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122 | ||||| |||||||| |||||||||||| |||| ||||| | ||||||||||| Sbjct 24180 CTGATTTGAGGAAACCTTTGTACGCCTCCGTTACCTTTTAGGAGG-CGACCGCCCCAGTC 24238 Query 123 AAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTA-GATATCCACT 181 ||||| |||||| | ||||| || | | | || || | | || | || | Sbjct 24239 AAACTGCCCACCTGAAACTGTTTTTTCACCGGCTAACGGTTGAAAATGAAGAGGTTCAAT 24298 Query 182 ACGGTCAGAGTGGTATTTCAACAACGACTCCACAA---CCACTAGCGTGGCCGCATCATA 238 | |||||||||| ||| | |||||| | |||| || | | || || Sbjct 24299 CTTCTTAGAGTGGTATCTCACGATCGACTCTAGCTTTCCCACAAGAAAGCCT---TCGTA 24355 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 ||||||||||||| || | |||| | |||| |||| || |||| ||| ||| | Sbjct 24356 GTCTCCCACCTATTCTGCGCAAAGAAAATCGAAACTCAATTTCAGGCTACAGTAAAGCTT 24415 Query 299 CCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | ||||||| |||||| ||| | | ||||||| || | | | ||||| | Sbjct 24416 CATAGGGTCTTACTGTCCTGGCGCAGGTAGTCCGCATCTTCACAGACATTTCTATTTCGC 24475 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 || | | | ||||||||| | || ||||||||||||||| ||||||||||||| Sbjct 24476 CGAGTCCCTCCTTGAGACAGTTTCCAAATCATTACGCCATTCGTGCGGGTCGGAACTTAC 24535 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 ||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||| Sbjct 24536 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCT 24595 Query 478 TCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCAC 537 ||||| | || ||| | | | | || ||||| | |||||||||| |||| Sbjct 24596 TCAATCATAAGCTTCAGAAAACTCTTG----ACTCAC----TTTTTTAACCTTCCGGCAC 24647 Query 538 CGGGCAGGCGTCAGTCCGTATACCTCG 564 ||||||||||||| || |||| ||| Sbjct 24648 TGGGCAGGCGTCAGCCCCCATACGTCG 24674 >seq1346 Length=39314 Score = 105 bits (116), Expect = 2e-20 Identities = 137/188 (73%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 287 ATAGTGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTA 345 ||||| ||||| | |||||||| |||| || | ||| ||||||| || ||| Sbjct 3826 ATAGTAAAGGTGCATAGGGTCTTTCCGTCTAATCGTAAGTAACCCGCATCTTCACGGGTA 3767 Query 346 CTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAG 405 | ||| |||| | | | ||||||| | ||||||||||| | || ||||| Sbjct 3766 TTTCAAATTCATCAAAAATATATGCGAGACAGTGAAGCAGTCGTTACGCTACTCATGCAG 3707 Query 406 GTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCG 465 | ||||| ||||||| ||||||||||||||||||||||| || | |||||| |||||| Sbjct 3706 GACGGAATTTACCCGCCAAGGAATTTCGCTACCTTAGGACCGTCAGAGTTACAGCCGCCG 3647 Query 466 TTTACTGG 473 ||| |||| Sbjct 3646 TTTGCTGG 3639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702363143040