Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmopara_20viticola_20[genbank_20GCA_5F001974925.1_202017-01-30] 2,165 sequences; 101,296,116 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1490 161 2e-37 seq100 132 1e-28 seq1346 84.2 5e-14 >seq1490 Length=214893 Score = 161 bits (178), Expect = 2e-37 Identities = 210/288 (73%), Gaps = 13/288 (5%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACA--------AGCTC 52 ||||||||||||| ||||||||| ||||||||| | |||||| || || | Sbjct 75096 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGTACCGTCATTAGTAATAGTT- 75038 Query 53 CCACACG-TGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCAT 111 | || | | ||| |||||| | |||||| ||||||| ||| || ||||| | Sbjct 75037 --ATTCGCTACTACCGTTTCTTCCCTGACAAAAGAGCTTTACAACCCGAAGG-CCTTCTT 74981 Query 112 CCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGC 171 | |||||| | | ||||| |||| | | |||||| |||| ||||| ||||||||| Sbjct 74980 CACTCACGCGGCATTGCTGGATCAGGGTTGCCCCCATTGTCCAAAATTCCCCACTGCTGC 74921 Query 172 CTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACC 231 ||||||||||||| ||| |||||||||||| ||| ||||| | | |||||||||| | Sbjct 74920 CTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCA 74861 Query 232 CCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| ||||| | || ||| ||| ||||||| || |||| ||||| Sbjct 74860 GCTACTGATCGTTGCCTTGGTAGGCTTTTACCCCACCAACTAGCTAAT 74813 >seq100 Length=112360 Score = 132 bits (146), Expect = 1e-28 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 67 TTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTG 126 |||| ||| | || ||||| ||||||| | | ||| |||| |||| | | Sbjct 27753 TTTTCCTCCTTAATGAAAGAGCTTTACAACCTAATTAGCCTCCATCACTCACTCGGTATT 27812 Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 ||||| ||| || ||| ||||| |||| |||||||||||||||||||||||||||| | Sbjct 27813 GCTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCT 27872 Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGG 246 ||||||||||||||||||| ||||| || | |||||||| | | ||| ||||| | Sbjct 27873 GGACCGTGTCTCAGTTCCAGTGTGGCTGATCATCCTCTCAAATCAGCTACTGATCGTCGC 27932 Query 247 CTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 || ||| ||| || || || |||| ||||| Sbjct 27933 CTTGGTAAGCCTTTCCCTTACCAACTAGCTAAT 27965 >seq1346 Length=39314 Score = 84.2 bits (92), Expect = 5e-14 Identities = 124/174 (71%), Gaps = 9/174 (5%) Strand=Plus/Minus Query 107 TTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACT 166 ||| || |||||| | | |||| ||| || ||| |||| |||||||||| |||| Sbjct 5843 TTCCTCACTCACGCAATATCACTGGATCAAGCTTTCGCTGATTGTCCAATATTCCCCACT 5784 Query 167 GCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCA 226 |||| | ||| |||||| | ||||||||||||||||| || | | | | || Sbjct 5783 GCTGACAT-------AGTCTGGACCTTATCTCAGTTCCAATGTGGCTGATCGTTCGC-CA 5732 Query 227 GAACC-CCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 |||| ||| |||| ||||| |||| ||| ||||||| || || ||||||| Sbjct 5731 AAACCAGCTAAGGATCGCAGGCTTGGTGAGCCTTTACCCCACCAACCACCTAAT 5678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068776860480